Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_I09
         (884 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   4.9  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   8.6  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 35  FLKILSYLWLDHTNVHVIFI*IIMNF*YC 121
           FL   S+ +L  TN   IF+  I  F YC
Sbjct: 193 FLTSCSFDYLTDTNEIRIFVATIFTFSYC 221


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +1

Query: 514 LFTIASHSVKNEGDLKLVLAAPLHWSNESRERLVKCAELAGFEV 645
           L T A +SV      +L+ +  L+W   +    +K   + GFE+
Sbjct: 18  LLTNADNSVHILSKYQLITSTTLNWLPRTHYDHLKEIVIGGFEI 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,188
Number of Sequences: 438
Number of extensions: 4347
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)