Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_I08
         (1209 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1136 + 24218601-24218734,24218769-24219906                       32   1.0  
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    32   1.0  
02_05_0686 - 30900748-30902167,30903442-30904742                       29   9.7  

>07_03_1136 + 24218601-24218734,24218769-24219906
          Length = 423

 Score = 31.9 bits (69), Expect = 1.0
 Identities = 18/52 (34%), Positives = 20/52 (38%)
 Frame = -1

Query: 840 GGGGXXPPXXGXXKNPPSXXXXXXXXXGAPPXFFXXGGSPXPPKKXFFXGXG 685
           GGGG  PP  G    PPS         GA P     GG    P++    G G
Sbjct: 102 GGGGARPPGGGGGGGPPSLPPGAGGGGGARPPAPGGGGGGGAPRRVLGGGGG 153


>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 31.9 bits (69), Expect = 1.0
 Identities = 20/69 (28%), Positives = 22/69 (31%)
 Frame = +2

Query: 644  PPPPXGGGGKXXXXPXPXKKXFLGGXGXPPXXKKXXXXXXXXXXXXXXXXXXXX*PXXGG 823
            PPPP GG G     P P     +GG   PP                            GG
Sbjct: 1123 PPPPIGGLGGHQAPPAPPLPEGIGGVPPPPPVGGLGGPPAPPPPAGFRGGTPPP-NAHGG 1181

Query: 824  XXPPPPPXK 850
              PPPPP +
Sbjct: 1182 VAPPPPPPR 1190



 Score = 28.7 bits (61), Expect = 9.7
 Identities = 17/53 (32%), Positives = 19/53 (35%)
 Frame = -1

Query: 843  GGGGGXXPPXXGXXKNPPSXXXXXXXXXGAPPXFFXXGGSPXPPKKXFFXGXG 685
            G GG   PP  G    PP+         G PP     G +P PP      G G
Sbjct: 1144 GIGGVPPPPPVGGLGGPPAPPPPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVG 1196


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 28.7 bits (61), Expect = 9.7
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = +2

Query: 644 PPPPXGGGGKXXXXPXPXKKXFLGGXGXPP 733
           PPPP   GGK    P P  K   GG   PP
Sbjct: 364 PPPPPPPGGKKGGPPPPPPK---GGASRPP 390


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,393,451
Number of Sequences: 37544
Number of extensions: 350604
Number of successful extensions: 955
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3701409336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)