Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_I05
         (923 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023856-4|CAC15863.1|  331|Caenorhabditis elegans Hypothetical ...    31   1.5  
AF125956-4|AAD14723.1|  353|Caenorhabditis elegans Serpentine re...    28   8.2  

>AL023856-4|CAC15863.1|  331|Caenorhabditis elegans Hypothetical
           protein Y94A7B.7 protein.
          Length = 331

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 40  IP*DFLVLFAFNSISIHFQTVVSYFRNKHFVICIDK 147
           IP D LV++      I   T++S F N++FV+ + K
Sbjct: 90  IPTDILVIYVLAIFKIVPMTIISMFENRYFVLFVKK 125


>AF125956-4|AAD14723.1|  353|Caenorhabditis elegans Serpentine
           receptor, class h protein78 protein.
          Length = 353

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 109 YFRNKHFVICIDKQYITI 162
           YF+N  FV+ +DK YIT+
Sbjct: 193 YFKNTVFVLVVDKNYITL 210


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,997,837
Number of Sequences: 27780
Number of extensions: 311218
Number of successful extensions: 832
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)