Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_I02
         (1111 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P62318 Cluster: Small nuclear ribonucleoprotein Sm D3; ...    48   3e-04
UniRef50_Q17348 Cluster: Small nuclear ribonucleoprotein Sm D3; ...    43   0.016
UniRef50_A1CHW9 Cluster: Small nuclear ribonucleoprotein SmD3, p...    40   0.12 
UniRef50_A0CT01 Cluster: Chromosome undetermined scaffold_266, w...    36   2.5  
UniRef50_A0C2U8 Cluster: Chromosome undetermined scaffold_145, w...    36   2.5  
UniRef50_UPI0000D8A096 Cluster: small nuclear ribonucleoprotein ...    35   4.3  
UniRef50_Q9LMW6 Cluster: F5M15.9; n=4; Arabidopsis thaliana|Rep:...    34   7.6  
UniRef50_Q5CSL0 Cluster: Small nucealr riboprotein SMD3, SM doma...    34   7.6  
UniRef50_Q5KLG7 Cluster: Pre-mRNA splicing factor, putative; n=1...    33   10.0 

>UniRef50_P62318 Cluster: Small nuclear ribonucleoprotein Sm D3;
           n=40; Fungi/Metazoa group|Rep: Small nuclear
           ribonucleoprotein Sm D3 - Homo sapiens (Human)
          Length = 126

 Score = 48.4 bits (110), Expect = 3e-04
 Identities = 26/60 (43%), Positives = 30/60 (50%)
 Frame = +1

Query: 199 MSIGVPXXXXXXAEGHVXTGEXXTGXVXXGXLXEAEDNMXXHMXVVXTHXEMAELXQLXE 378
           MSIGVP      AEGH+ T E  TG V  G L EAEDNM   M  +        + QL +
Sbjct: 1   MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQ 60


>UniRef50_Q17348 Cluster: Small nuclear ribonucleoprotein Sm D3;
           n=3; Eukaryota|Rep: Small nuclear ribonucleoprotein Sm
           D3 - Caenorhabditis elegans
          Length = 136

 Score = 42.7 bits (96), Expect = 0.016
 Identities = 21/38 (55%), Positives = 23/38 (60%)
 Frame = +1

Query: 202 SIGVPXXXXXXAEGHVXTGEXXTGXVXXGXLXEAEDNM 315
           S+GVP      AEGH+ T E  TG V  G L EAEDNM
Sbjct: 3   SVGVPIKILHEAEGHMVTLETVTGEVYRGKLSEAEDNM 40


>UniRef50_A1CHW9 Cluster: Small nuclear ribonucleoprotein SmD3,
           putative; n=12; Eukaryota|Rep: Small nuclear
           ribonucleoprotein SmD3, putative - Aspergillus clavatus
          Length = 136

 Score = 39.9 bits (89), Expect = 0.12
 Identities = 19/38 (50%), Positives = 23/38 (60%)
 Frame = +1

Query: 202 SIGVPXXXXXXAEGHVXTGEXXTGXVXXGXLXEAEDNM 315
           +IG+P      A+GHV T E  +G V  G L EAEDNM
Sbjct: 7   TIGIPIKLLNEAQGHVVTLEITSGVVYRGKLLEAEDNM 44


>UniRef50_A0CT01 Cluster: Chromosome undetermined scaffold_266,
           whole genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_266,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 363

 Score = 35.5 bits (78), Expect = 2.5
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = +1

Query: 199 MSIGVPXXXXXXAEGHVXTGEXXTGXVXXGXLXEAEDNMXXHMXVV 336
           MS+GVP      A  H+ T E  TG +  G + EAED M   +  V
Sbjct: 1   MSLGVPLKIMHEAVHHIVTVELKTGEMFTGYMAEAEDTMNVRLDEV 46


>UniRef50_A0C2U8 Cluster: Chromosome undetermined scaffold_145,
           whole genome shotgun sequence; n=5; Eukaryota|Rep:
           Chromosome undetermined scaffold_145, whole genome
           shotgun sequence - Paramecium tetraurelia
          Length = 122

 Score = 35.5 bits (78), Expect = 2.5
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = +1

Query: 199 MSIGVPXXXXXXAEGHVXTGEXXTGXVXXGXLXEAEDNMXXHMXVV 336
           MS+GVP      A  H+ T E  TG +  G + EAED M   +  V
Sbjct: 1   MSLGVPLKIMHEAVHHIVTVELKTGEMFTGYMAEAEDTMNVRLDEV 46


>UniRef50_UPI0000D8A096 Cluster: small nuclear ribonucleoprotein
           (snrnp),putative; n=1; Eimeria tenella|Rep: small
           nuclear ribonucleoprotein (snrnp),putative - Eimeria
           tenella
          Length = 125

 Score = 34.7 bits (76), Expect = 4.3
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +1

Query: 202 SIGVPXXXXXXAEGHVXTGEXXTGXVXXGXLXEAEDNMXXHM-XVVXTHXE 351
           S+G+P        GH  T E  TG +  G L  AEDNM   +  V  TH +
Sbjct: 6   SVGIPVKLLHEGLGHTITVETKTGSLYRGTLENAEDNMNMLIQGVTVTHKD 56


>UniRef50_Q9LMW6 Cluster: F5M15.9; n=4; Arabidopsis thaliana|Rep:
           F5M15.9 - Arabidopsis thaliana (Mouse-ear cress)
          Length = 207

 Score = 33.9 bits (74), Expect = 7.6
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 202 SIGVPXXXXXXAEGHVXTGEXXTGXVXXGXLXEAEDN 312
           S+G+P      A GH+ T E  +G +  G + E EDN
Sbjct: 4   SLGIPVKLLHEASGHIVTVELKSGELYRGSMIECEDN 40


>UniRef50_Q5CSL0 Cluster: Small nucealr riboprotein SMD3, SM domain;
           n=5; Apicomplexa|Rep: Small nucealr riboprotein SMD3, SM
           domain - Cryptosporidium parvum Iowa II
          Length = 143

 Score = 33.9 bits (74), Expect = 7.6
 Identities = 18/61 (29%), Positives = 26/61 (42%)
 Frame = +1

Query: 199 MSIGVPXXXXXXAEGHVXTGEXXTGXVXXGXLXEAEDNMXXHMXVVXTHXEMAELXQLXE 378
           M+IG+P        GH+ T E  +G +  G L   EDNM   +  V       +   L +
Sbjct: 23  MTIGIPLKLLYEGLGHIVTIELKSGDLYRGTLTHVEDNMNCMLEHVNATMRDGKPVSLEQ 82

Query: 379 C 381
           C
Sbjct: 83  C 83


>UniRef50_Q5KLG7 Cluster: Pre-mRNA splicing factor, putative; n=12;
           Eukaryota|Rep: Pre-mRNA splicing factor, putative -
           Cryptococcus neoformans (Filobasidiella neoformans)
          Length = 124

 Score = 33.5 bits (73), Expect = 10.0
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +1

Query: 202 SIGVPXXXXXXAEGHVXTGEXXTGXVXXGXLXEAEDNMXXHMXVVXTHXEMAELXQLXE 378
           ++GVP      + GH+ T E  TG +  G L EAED +   +  +        + QL +
Sbjct: 3   NLGVPVKLLHESLGHIITVELKTGEMYRGKLMEAEDTLNIALREITVTARDGRVSQLEQ 61


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 437,310,951
Number of Sequences: 1657284
Number of extensions: 3714648
Number of successful extensions: 2433
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2433
length of database: 575,637,011
effective HSP length: 102
effective length of database: 406,594,043
effective search space used: 108560609481
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)