Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_I02
         (1111 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117204-26|CAB55132.1|  136|Caenorhabditis elegans Hypothetical...    43   5e-04
U23937-1|AAA65451.1|   71|Caenorhabditis elegans small nuclear r...    29   4.5  

>AL117204-26|CAB55132.1|  136|Caenorhabditis elegans Hypothetical
           protein Y116A8C.42 protein.
          Length = 136

 Score = 42.7 bits (96), Expect = 5e-04
 Identities = 21/38 (55%), Positives = 23/38 (60%)
 Frame = +1

Query: 202 SIGVPXXXXXXAEGHVXTGEXXTGXVXXGXLXEAEDNM 315
           S+GVP      AEGH+ T E  TG V  G L EAEDNM
Sbjct: 3   SVGVPIKILHEAEGHMVTLETVTGEVYRGKLSEAEDNM 40


>U23937-1|AAA65451.1|   71|Caenorhabditis elegans small nuclear
           ribonucleoprotein protein.
          Length = 71

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 14/24 (58%), Positives = 15/24 (62%)
 Frame = +1

Query: 244 HVXTGEXXTGXVXXGXLXEAEDNM 315
           H+ T E  TG V  G L EAEDNM
Sbjct: 3   HMVTLETVTGEVYRGKLSEAEDNM 26


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,680,120
Number of Sequences: 27780
Number of extensions: 90403
Number of successful extensions: 81
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 3002662306
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)