Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_I01
         (874 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098504-5|AAC67410.3|  322|Caenorhabditis elegans Serpentine re...    29   4.3  
Z70307-7|CAA94336.2|  531|Caenorhabditis elegans Hypothetical pr...    29   5.7  
U80447-8|AAB37812.3|  900|Caenorhabditis elegans Patched related...    28   7.6  

>AF098504-5|AAC67410.3|  322|Caenorhabditis elegans Serpentine
           receptor, class t protein62 protein.
          Length = 322

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -3

Query: 821 NCKYXXLXHRNEREQVKLVIKXVLITINCHIHFVXWND 708
           N K   L  +N   +VK++I+  +IT+ C +  V W++
Sbjct: 209 NTKKKYLISKNYNAEVKILIQATVITVYCTVLNVLWHN 246


>Z70307-7|CAA94336.2|  531|Caenorhabditis elegans Hypothetical
           protein C39E9.7 protein.
          Length = 531

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = -1

Query: 745 QSIVTFISLXGMILRTNIN*INNVLVH---FVLCALLMLIPCFFFVEC*NS 602
           +S++T  S+  ++  T I    N +     FV+CA + +IP  FF  C N+
Sbjct: 133 ESLITVTSVGTVLAATPITFAYNNMGFRRSFVMCAFISIIPALFFPICVNA 183


>U80447-8|AAB37812.3|  900|Caenorhabditis elegans Patched related
           family protein 10 protein.
          Length = 900

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -3

Query: 677 CVSTLCSLRIIDVNPMFFFC*MLKFYNKI 591
           C+ T+C+L +     + FFC +L +Y +I
Sbjct: 407 CIYTMCALLLTFAYQLTFFCAILVYYTRI 435


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,184,588
Number of Sequences: 27780
Number of extensions: 327665
Number of successful extensions: 524
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)