Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_I01
         (874 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    26   0.52 
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   2.8  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   2.8  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   3.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   8.5  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 25.8 bits (54), Expect = 0.52
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 743 INCHIHFVXWNDS*NKYKLN 684
           +NC IH   W+   N+ KLN
Sbjct: 171 LNCTIHIASWSHGSNEIKLN 190


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +1

Query: 553 SKVYGLREPLQIYILL*NFNIQQKKNMGLTSIMRKEQSVLTHYLFNLY 696
           +K YG+ + L   IL  NF+ Q K N+  +++     S+     + LY
Sbjct: 377 TKFYGMYDILARDILGYNFDFQNKNNLIPSALQSYSTSMRDPAFYMLY 424


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +1

Query: 553 SKVYGLREPLQIYILL*NFNIQQKKNMGLTSIMRKEQSVLTHYLFNLY 696
           +K YG+ + L   IL  NF+ Q K N+  +++     S+     + LY
Sbjct: 377 TKFYGMYDILARDILGYNFDFQNKNNLIPSALQSYSTSMRDPAFYMLY 424


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 438 NRLQNLCIKFNSKCNQIHNY 379
           N LQNL  +F+S C Q+  Y
Sbjct: 514 NMLQNLYEQFDSFCGQLDVY 533


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 177 CIATLPRNTSLV*TSHYRSQRWLC 248
           C  + PR  ++V  S  RS+++LC
Sbjct: 714 CRTSGPRGVAIVSASTARSEQFLC 737


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,082
Number of Sequences: 438
Number of extensions: 4425
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)