Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_H24
         (918 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    29   4.7  
AY204177-1|AAO39181.1|  385|Caenorhabditis elegans nuclear recep...    29   6.2  
AL022272-2|CAA18351.1|  385|Caenorhabditis elegans Hypothetical ...    29   6.2  
U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    28   8.1  

>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 15/37 (40%), Positives = 15/37 (40%)
 Frame = +2

Query: 278  GXXPPXXGXXXPXXGXAPXXRGGXXXFXGGKKGXXXG 388
            G  PP  G   P  G  P  RGG   F GG  G   G
Sbjct: 1480 GMPPPMRGGGPPMRG-GPPMRGGPPMFRGGPPGPGRG 1515


>AY204177-1|AAO39181.1|  385|Caenorhabditis elegans nuclear receptor
           NHR-68 protein.
          Length = 385

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 134 RFITESKLYMYNKXDXFKTETY*QQFKVLXGMPH 33
           RFIT+   + +++ D F    Y + FKV   MP+
Sbjct: 181 RFITQDDYHYWHERDWFVLTEYAKTFKVFKNMPY 214


>AL022272-2|CAA18351.1|  385|Caenorhabditis elegans Hypothetical
           protein H12C20.3 protein.
          Length = 385

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 134 RFITESKLYMYNKXDXFKTETY*QQFKVLXGMPH 33
           RFIT+   + +++ D F    Y + FKV   MP+
Sbjct: 181 RFITQDDYHYWHERDWFVLTEYAKTFKVFKNMPY 214


>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = -3

Query: 565 PXXXXPPPXXXPXXPXXXXXPXXPPXPP 482
           P    PPP   P  P     P  PP PP
Sbjct: 52  PPQFCPPPPMCPPPPPPPPPPMCPPPPP 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,060,268
Number of Sequences: 27780
Number of extensions: 58236
Number of successful extensions: 223
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)