Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_H23
         (859 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0085 + 11555539-11555632,11555767-11555867,11556947-115570...    30   2.7  
02_04_0592 - 24171698-24172285                                         29   4.7  
12_01_0344 + 2647044-2647238,2647452-2647553,2647789-2647911,264...    28   8.3  

>06_02_0085 +
           11555539-11555632,11555767-11555867,11556947-11557056,
           11557152-11557227,11557412-11557555,11558432-11558503,
           11558601-11559470
          Length = 488

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 20/56 (35%), Positives = 30/56 (53%)
 Frame = +3

Query: 576 QKTPEKTKVLMALMDWLEEIKKSHVXXEXXSNDXXAQXHLENYALKXVLYADNQDR 743
           ++T     +L++LM+ LE+ KKS       S+D     H+E +AL     AD QDR
Sbjct: 47  ERTKTTNSLLISLMNQLEKDKKS---LTLGSDD---HLHVEGFALNVFAKADKQDR 96


>02_04_0592 - 24171698-24172285
          Length = 195

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 195 MDVLRVAAIYYFLNVSYQYLYKVTKRPKRKRLWMI 91
           + V+ V   Y+ L V   Y Y +   P+RK LW++
Sbjct: 102 LPVIPVVGDYWVLYVDDDYQYALVGEPRRKDLWIL 136


>12_01_0344 +
           2647044-2647238,2647452-2647553,2647789-2647911,
           2648066-2648183,2649022-2649347
          Length = 287

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -1

Query: 367 LRVMLEPHCVMRYSLCDYAVFAKIFVKRANNKHAIHTSNLCAE 239
           L+ ML+  CV +Y L    + AKI  K A  K  + +S + AE
Sbjct: 118 LQGMLKEECVDQYKLLSDRLLAKIVPKVARVKKPVSSSEVYAE 160


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,896,344
Number of Sequences: 37544
Number of extensions: 333281
Number of successful extensions: 740
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)