Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_H23
         (859 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    24   1.6  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   3.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.8  

>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -1

Query: 856 HSFIXSSFIXQXXKXGKNIIDHTRSIKCLDHIFSIXCS 743
           HS I    I Q    G N+IDH    + L  +F + C+
Sbjct: 15  HSIIQIPVIIQLPFCGPNVIDH--YFRDLQPLFKLACT 50


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
 Frame = -2

Query: 201 LAMDVLRVAAIY----YFLNVSYQYLYKVTKRPKRKRLW 97
           LA+ +  +A I+    YF N  + YL+ +T   K  RL+
Sbjct: 75  LALSISMLARIWKPDTYFYNGKHSYLHTITSPNKFVRLY 113


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 76  TSIHDRHKRANQILRIP 26
           TS+H+ H    ++LRIP
Sbjct: 92  TSLHELHVHGCKVLRIP 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,372
Number of Sequences: 438
Number of extensions: 3779
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)