Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_H22
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding...    48   2e-06
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    32   0.094
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    30   0.50 
SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual    28   2.0  

>SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding
           protein Ssb2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 279

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 36/152 (23%), Positives = 66/152 (43%), Gaps = 6/152 (3%)
 Frame = +1

Query: 364 PSRGGFLNTTNQFGNTATPKKTGRRAA--RTAPIVIRQALHSGEEGV----KIWGTEXXX 525
           P  GG     N++  ++ P    ++ A  +  P+ I+Q L++ +       KI G E   
Sbjct: 21  PGMGGGAGF-NEYDQSSQPSVDRQQGAGNKLRPVTIKQILNASQVHADAEFKIDGVEVGQ 79

Query: 526 XXXXXXXXXXXMQSTKITYTIQDITGRMRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGN 705
                       Q+T  TY I+D TG +    W   +A+        ++  + Y+++YGN
Sbjct: 80  VTFVGVLRNIHAQTTNTTYQIEDGTGMIEVRHWEHIDALS-------ELATDTYVRVYGN 132

Query: 706 VKTNKGTKVLMAFKIMPVTDVNIITFHYFQCI 801
           +K   G   + +  I  + D N + FH+ + I
Sbjct: 133 IKIFSGKIYIASQYIRTIKDHNEVHFHFLEAI 164


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1261

 Score = 32.3 bits (70), Expect = 0.094
 Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
 Frame = +1

Query: 565  STKITYTIQDITGRMRAVLWLDQE-AMEVEDTSSPKVQVNDYIQIYGNVKTNKGTKVLMA 741
            +T I + +Q +  R +A+ + ++  A ++E +S     + D    YG +K      V   
Sbjct: 1001 NTMIQFEVQTMFNREKALFYYNRLCATDIEPSSHTYKLLMD---AYGTLKPVNVGSVKAV 1057

Query: 742  FKIMPVTDVNIITFHYFQCIH 804
             ++M  TDV I++ HY   IH
Sbjct: 1058 LELMERTDVPILSMHYAAYIH 1078


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
 Frame = -3

Query: 528 HYLNFCTPYFHTFFSRMQS-----LPDDYRCCP 445
           HYL+ C+PY  +F  R++S     LPD  + CP
Sbjct: 227 HYLSDCSPYTGSFVQRIRSILTEPLPDISKSCP 259


>SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 180

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 16/27 (59%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
 Frame = -1

Query: 224 LILIPVDFFQASKPL--GSH-ILSSKR 153
           L++ PV +FQ  KPL  G H ILSSKR
Sbjct: 113 LVITPVPWFQVRKPLDCGVHLILSSKR 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,373,508
Number of Sequences: 5004
Number of extensions: 67950
Number of successful extensions: 168
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)