Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_H22
         (878 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1313 - 35658599-35658683,35659231-35659313,35659394-356594...    71   9e-13
06_03_1228 - 28563546-28563630,28563897-28564000,28564256-285647...    47   2e-05
02_05_0049 - 25423260-25423344,25423415-25423483,25424143-254242...    38   0.008
01_06_1618 - 38681729-38683989,38685577-38685796                       30   2.1  
01_01_0381 - 2961422-2963917                                           28   8.6  

>02_05_1313 -
           35658599-35658683,35659231-35659313,35659394-35659489,
           35659615-35659693,35659775-35659852,35659989-35660030,
           35660435-35660532,35660628-35660747,35660840-35660926
          Length = 255

 Score = 71.3 bits (167), Expect = 9e-13
 Identities = 50/168 (29%), Positives = 81/168 (48%), Gaps = 11/168 (6%)
 Frame = +1

Query: 379 FLNTTNQFGNTATPKKTGRRAARTAPIVIRQ---ALHSGEEGVK-----IWGTEXXXXXX 534
           F ++ N   ++ TP K+ R A+ T P+ ++Q   A  SG  G K     + G E      
Sbjct: 14  FTSSQNAAADSTTPSKS-RGASSTMPLTVKQISEAQQSGITGEKGAPFVVDGVETANVRL 72

Query: 535 XXXXXXXXMQSTKITYTIQDITGRMRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKT 714
                    ++T +++TI D TGR+  + W++  A   E  +   VQ   Y+ + G++K 
Sbjct: 73  VGLVSGKTERNTDVSFTIDDGTGRLDFIRWVNDGADSAETAA---VQNGMYVSVIGSLKG 129

Query: 715 NKGTKVLMAFKIMPVTDVNIITFHYFQCIHNKIQ---XEAGSRRKKYS 849
            +  K   AF I PVTD N +T H+ QC+   ++    + GS  K YS
Sbjct: 130 LQERKRATAFAIRPVTDYNEVTLHFIQCVRMHLENTKSQIGSPAKTYS 177


>06_03_1228 -
           28563546-28563630,28563897-28564000,28564256-28564759,
           28564854-28564932,28566053-28566130,28566227-28566268,
           28566352-28566449,28566542-28566673,28566757-28566879
          Length = 414

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 21/81 (25%), Positives = 44/81 (54%)
 Frame = +1

Query: 562 QSTKITYTIQDITGRMRAVLWLDQEAMEVEDTSSPKVQVNDYIQIYGNVKTNKGTKVLMA 741
           + T + +T+ D TG++  V W+  ++ +  DTS   +Q   Y+++  N+   +  K  +A
Sbjct: 98  RDTDVCFTLDDSTGKIPLVRWITDQS-DTRDTS--YIQEGVYVKVQVNLMGFQAKKQGLA 154

Query: 742 FKIMPVTDVNIITFHYFQCIH 804
             I P+ + N +  H+ +C+H
Sbjct: 155 RSIRPINNFNEVVLHFIECMH 175


>02_05_0049 -
           25423260-25423344,25423415-25423483,25424143-25424231,
           25424315-25424407,25424516-25424594,25425557-25425657,
           25425864-25425944,25426369-25426740
          Length = 322

 Score = 38.3 bits (85), Expect = 0.008
 Identities = 12/41 (29%), Positives = 26/41 (63%)
 Frame = +1

Query: 682 DYIQIYGNVKTNKGTKVLMAFKIMPVTDVNIITFHYFQCIH 804
           DY+ + G +K  +G + ++A+ +  +T+ N +T H+  C+H
Sbjct: 162 DYVIVNGGLKGFQGKRQVVAYSVRRITNFNDVTHHFLHCVH 202


>01_06_1618 - 38681729-38683989,38685577-38685796
          Length = 826

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 574 ITYTIQDITGRMRAVLWLDQEAMEVEDTSSPKVQVNDY 687
           +T  + D+TG+++ + W+D  A  V   S PK Q + Y
Sbjct: 283 LTRFVVDVTGQIKFMTWVDSAAQWVLFWSEPKAQCDVY 320


>01_01_0381 - 2961422-2963917
          Length = 831

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 574 ITYTIQDITGRMRAVLWLDQEAMEVEDTSSPKVQVNDY 687
           +T    D+ GR +  +WLD     +   S+PKVQ + Y
Sbjct: 272 VTRNFIDVDGRNKQQVWLDSSQSWLTLYSNPKVQCDVY 309


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,776,026
Number of Sequences: 37544
Number of extensions: 395679
Number of successful extensions: 955
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)