Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_H22
         (878 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49068-2|CAA88855.1|  389|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z81537-3|CAB04374.1|  348|Caenorhabditis elegans Hypothetical pr...    29   5.8  
AF077542-8|AAC26300.2|  342|Caenorhabditis elegans Serpentine re...    29   5.8  

>Z49068-2|CAA88855.1|  389|Caenorhabditis elegans Hypothetical
           protein K01C8.2 protein.
          Length = 389

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -3

Query: 474 SLPDDYRCCPCRSTTSFLGCCRI-SKLIC 391
           S P  Y C P    + FL CCR+ S LIC
Sbjct: 318 SCPIGYSCAPSNQVSQFL-CCRLASSLIC 345


>Z81537-3|CAB04374.1|  348|Caenorhabditis elegans Hypothetical
           protein F41D3.3 protein.
          Length = 348

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
 Frame = -3

Query: 549 PDSCNY*HYLNFCTPYFHTFFSRMQSLPDDYRC-----CPCRSTTSFLGC--CRISKLIC 391
           P S  Y H+   C P   +FF R  SL   Y C     C   S    + C  CR  K  C
Sbjct: 16  PCSMRYSHFGGICCPACASFFRRTVSLNIRYLCKKQNNCSGISKKYHIVCRACRYEK--C 73

Query: 390 GVKEATPRRIIIPH 349
            +K+A  +R ++ H
Sbjct: 74  -IKKAGMKRSLVQH 86


>AF077542-8|AAC26300.2|  342|Caenorhabditis elegans Serpentine
           receptor, class z protein64 protein.
          Length = 342

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/47 (23%), Positives = 24/47 (51%)
 Frame = -3

Query: 813 YFIMNALKVVKCNNVDVSNWHYFKCHEYFCPFIRFHIAVNLYVIIYL 673
           +F+M  +       ++++ W +     Y  PF  FH+ + L V++Y+
Sbjct: 177 FFLMEVINEDPVVELELTGWEWINYIPYV-PFYSFHVLIFLSVLLYI 222


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,599,107
Number of Sequences: 27780
Number of extensions: 383764
Number of successful extensions: 993
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)