Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_H21
         (899 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024776-21|AAK68479.1|   65|Caenorhabditis elegans Ribosomal pr...    81   1e-15
Z81129-4|CAB03405.1|  330|Caenorhabditis elegans Hypothetical pr...    31   0.85 
AC006807-3|AAK84617.1|  883|Caenorhabditis elegans Hypothetical ...    31   0.85 
AC006807-4|AAK84618.1|  904|Caenorhabditis elegans Hypothetical ...    30   2.6  

>AC024776-21|AAK68479.1|   65|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 28 protein.
          Length = 65

 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 41/54 (75%), Positives = 46/54 (85%), Gaps = 1/54 (1%)
 Frame = +3

Query: 120 MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIG-ETSRQIIRNVKGPVRDGDILT 278
           MDK   LARV KV+GRTGSQGQCTQV+VEFI  + +R IIRNVKGPVR+GDILT
Sbjct: 1   MDKLT-LARVTKVIGRTGSQGQCTQVRVEFINDQNNRSIIRNVKGPVREGDILT 53


>Z81129-4|CAB03405.1|  330|Caenorhabditis elegans Hypothetical
           protein T23F1.6 protein.
          Length = 330

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 59  ETRQLWCTCVNCIKLDITSQNG*TQRSCSCREST 160
           ETRQ  C C   ++   + Q    Q SCSC+ ST
Sbjct: 22  ETRQASCGCAQSVQPTCSCQQASQQYSCSCQPST 55


>AC006807-3|AAK84617.1|  883|Caenorhabditis elegans Hypothetical
           protein Y58A7A.3 protein.
          Length = 883

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 22/77 (28%), Positives = 30/77 (38%)
 Frame = -3

Query: 801 EPGXRPKTQTASXPXVGRFINAXKTLPHLPLNPETXNECNXCX*LVYCSFIMVTNKAIAS 622
           EPG   KTQ  S P    +    K +PH P+N E   E      L Y     + N     
Sbjct: 619 EPGNENKTQNRSCPCGYSWCRDCKGVPHWPMNCENYAEWEKKWHLRYA----MMNAQGTG 674

Query: 621 PISXIKHFFHCILVVVC 571
            ++ ++   HC  V  C
Sbjct: 675 TVTLLQFTCHCKTVYYC 691


>AC006807-4|AAK84618.1|  904|Caenorhabditis elegans Hypothetical
           protein Y58A7A.4 protein.
          Length = 904

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -3

Query: 801 EPGXRPKTQTASXPXVGRFINAXKTLPHLPLNPETXNE 688
           EPG   KTQ  S P    +    K +PH P+N E   E
Sbjct: 638 EPGNENKTQNRSCPCGYSWCRDCKGVPHWPMNCENYAE 675


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,037,442
Number of Sequences: 27780
Number of extensions: 279477
Number of successful extensions: 584
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)