Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_H20
         (968 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC607.02c |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.75 
SPCC1919.03c |||AMP-activated protein kinase beta subunit |Schiz...    26   6.9  

>SPAC607.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 231

 Score = 29.5 bits (63), Expect = 0.75
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = +3

Query: 294 MKKLPGESGRDFSLRINSALKALHNPVENLDYPEDID--TEDTKGERMAAQRERR 452
           +++LPGE   +FS R+N A+     PV     P  ID  T+  + +++A ++E+R
Sbjct: 71  IQRLPGERLSEFSQRVNKAI-----PVSFKSGPSKIDEFTDKKEKKKIAKRKEKR 120


>SPCC1919.03c |||AMP-activated protein kinase beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 298

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 434 GTEGTQGHVNVKRQRKGKKT 493
           GT G+ GH   + Q  GKKT
Sbjct: 71  GTSGSSGHTKRRSQTSGKKT 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,574,451
Number of Sequences: 5004
Number of extensions: 42378
Number of successful extensions: 110
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 497299314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)