Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_H19
         (874 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0827 + 32260313-32260525,32261862-32262716                       35   0.074
04_03_0289 + 13972020-13972077,13972444-13973301,13973850-139742...    29   6.4  
07_01_0496 - 3730822-3731280                                           28   8.5  

>01_06_0827 + 32260313-32260525,32261862-32262716
          Length = 355

 Score = 35.1 bits (77), Expect = 0.074
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 608 ERESNPMEALCRSGCGFYGNPPQTDFAQFALRK 706
           ++ S     LC SGCGFYGNP   D      R+
Sbjct: 195 QQASAGQPVLCASGCGFYGNPATLDMCSVCYRQ 227


>04_03_0289 +
           13972020-13972077,13972444-13973301,13973850-13974235,
           13974249-13974323,13975824-13976139,13976284-13977113
          Length = 840

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = +1

Query: 334 SKLSFSTTVCPSKVLTQK*RSYTTNKENCCAEHKPDVTWPTFESKLVR 477
           S +   T  CP++ +T+K      N   CC     + T   F+ K V+
Sbjct: 168 SAVRLCTVTCPNEEITEKVARQNCNGTGCCTIELFEATLSAFQFKFVQ 215


>07_01_0496 - 3730822-3731280
          Length = 152

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 646 GLRFLRQSSTDGLCSVCFKE 705
           G  F   ++TDGLCS C+K+
Sbjct: 21  GCGFFGSAATDGLCSKCYKQ 40


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,984,717
Number of Sequences: 37544
Number of extensions: 349575
Number of successful extensions: 747
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)