Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_H11
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    31   0.22 
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    27   2.7  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.2  
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    26   6.2  

>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
 Frame = -1

Query: 155 PTAASNNEKTRKNFVPHYSKFSYPKLHK----CFRSENNS 48
           P    N+ KTR++F PH S  S+  LH+     F SEN S
Sbjct: 198 PNLLGNDSKTRQSFPPHSSSSSHNSLHEPVIYDFSSENPS 237


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
 Frame = -2

Query: 328 FTTSIIRDSFQAIHFIRITSKPHIPLVQRTTPSISKRA----SIMIALKSDYVY 179
           F   + RD +    F+    KPH  LV+ + PS++       S+ ++ +S+++Y
Sbjct: 80  FDFDVCRDCYAKQAFLHPCPKPHFVLVRSSIPSVASLTCSVNSMSVSPQSNFMY 133


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 131 KTRKNFVPHYSKFSYPKLHKCFRSENNSD 45
           +T K  +P + +  YP LHK F SEN  D
Sbjct: 793 RTVKTLLPAFKEQVYPILHK-FVSENEKD 820


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 107 HYSKFSYPKLHKCFRSENNSD 45
           H SK+S P+LH  F    N+D
Sbjct: 142 HASKYSVPELHTTFLPNTNAD 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,876,432
Number of Sequences: 5004
Number of extensions: 50528
Number of successful extensions: 124
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)