Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_H10
(850 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81057-6|CAB02913.1| 221|Caenorhabditis elegans Hypothetical pr... 67 1e-11
D85499-1|BAA12821.1| 221|Caenorhabditis elegans manganese super... 67 1e-11
D12984-1|BAA02363.1| 221|Caenorhabditis elegans manganese super... 67 1e-11
X85790-1|CAA59790.1| 218|Caenorhabditis elegans mangenese super... 66 2e-11
X77021-1|CAA54319.1| 218|Caenorhabditis elegans manganese super... 66 2e-11
U42844-5|AAB53822.1| 218|Caenorhabditis elegans Sod (superoxide... 66 2e-11
AF497825-1|AAM18103.1| 670|Caenorhabditis elegans putative Na-H... 31 0.78
AF016447-15|AAR30208.1| 651|Caenorhabditis elegans Na/h exchang... 31 0.78
AF016447-14|AAG24015.2| 670|Caenorhabditis elegans Na/h exchang... 31 0.78
AC006769-16|AAF60588.2| 338|Caenorhabditis elegans Serpentine r... 30 1.8
Z73898-2|CAC42388.1| 667|Caenorhabditis elegans Hypothetical pr... 28 9.6
Z73898-1|CAC42389.1| 647|Caenorhabditis elegans Hypothetical pr... 28 9.6
AF497835-1|AAM18113.1| 647|Caenorhabditis elegans putative Na-H... 28 9.6
AF497834-1|AAM18112.1| 667|Caenorhabditis elegans putative Na-H... 28 9.6
>Z81057-6|CAB02913.1| 221|Caenorhabditis elegans Hypothetical
protein F10D11.1 protein.
Length = 221
Score = 67.3 bits (157), Expect = 1e-11
Identities = 29/53 (54%), Positives = 39/53 (73%)
Frame = +3
Query: 297 LYSILLQGDIDTIINLAPALKFNGGGHINHSIFWHNLSPNGGKPSDVLTKAVE 455
L+ + +G++ I L PALKFNGGGHINHSIFW NL+ +GG+PS L A++
Sbjct: 69 LHEAVSKGNVKEAIALQPALKFNGGGHINHSIFWTNLAKDGGEPSAELLTAIK 121
>D85499-1|BAA12821.1| 221|Caenorhabditis elegans manganese
superoxide dismutase protein.
Length = 221
Score = 67.3 bits (157), Expect = 1e-11
Identities = 29/53 (54%), Positives = 39/53 (73%)
Frame = +3
Query: 297 LYSILLQGDIDTIINLAPALKFNGGGHINHSIFWHNLSPNGGKPSDVLTKAVE 455
L+ + +G++ I L PALKFNGGGHINHSIFW NL+ +GG+PS L A++
Sbjct: 69 LHEAVSKGNVKEAIALQPALKFNGGGHINHSIFWTNLAKDGGEPSAELLTAIK 121
>D12984-1|BAA02363.1| 221|Caenorhabditis elegans manganese
superoxide dismutaseprecursor protein.
Length = 221
Score = 67.3 bits (157), Expect = 1e-11
Identities = 29/53 (54%), Positives = 39/53 (73%)
Frame = +3
Query: 297 LYSILLQGDIDTIINLAPALKFNGGGHINHSIFWHNLSPNGGKPSDVLTKAVE 455
L+ + +G++ I L PALKFNGGGHINHSIFW NL+ +GG+PS L A++
Sbjct: 69 LHEAVSKGNVKEAIALQPALKFNGGGHINHSIFWTNLAKDGGEPSAELLTAIK 121
>X85790-1|CAA59790.1| 218|Caenorhabditis elegans mangenese
superoxide dismutase protein.
Length = 218
Score = 66.5 bits (155), Expect = 2e-11
Identities = 28/54 (51%), Positives = 39/54 (72%)
Frame = +3
Query: 297 LYSILLQGDIDTIINLAPALKFNGGGHINHSIFWHNLSPNGGKPSDVLTKAVEK 458
L+ + +G++ I L PALKFNGGGHINHSIFW NL+ +GG+PS L +++
Sbjct: 69 LHEAVSKGNLKEAIALQPALKFNGGGHINHSIFWTNLAKDGGEPSKELMDTIKR 122
>X77021-1|CAA54319.1| 218|Caenorhabditis elegans manganese
superoxide dismutase protein.
Length = 218
Score = 66.5 bits (155), Expect = 2e-11
Identities = 28/54 (51%), Positives = 39/54 (72%)
Frame = +3
Query: 297 LYSILLQGDIDTIINLAPALKFNGGGHINHSIFWHNLSPNGGKPSDVLTKAVEK 458
L+ + +G++ I L PALKFNGGGHINHSIFW NL+ +GG+PS L +++
Sbjct: 69 LHEAVSKGNLKEAIALQPALKFNGGGHINHSIFWTNLAKDGGEPSKELMDTIKR 122
>U42844-5|AAB53822.1| 218|Caenorhabditis elegans Sod (superoxide
dismutase) protein3 protein.
Length = 218
Score = 66.5 bits (155), Expect = 2e-11
Identities = 28/54 (51%), Positives = 39/54 (72%)
Frame = +3
Query: 297 LYSILLQGDIDTIINLAPALKFNGGGHINHSIFWHNLSPNGGKPSDVLTKAVEK 458
L+ + +G++ I L PALKFNGGGHINHSIFW NL+ +GG+PS L +++
Sbjct: 69 LHEAVSKGNLKEAIALQPALKFNGGGHINHSIFWTNLAKDGGEPSKELMDTIKR 122
>AF497825-1|AAM18103.1| 670|Caenorhabditis elegans putative Na-H
exchanger isoform 3 protein.
Length = 670
Score = 31.5 bits (68), Expect = 0.78
Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +3
Query: 186 LRKLIFNVILILTLWVPEAPEVTITSIAMFVFLSVLSLYSILLQGDIDTIINLAPALKFN 365
L K++FN++ L+ W+P++ + I + + FL+ +L + L + L P + F+
Sbjct: 53 LAKILFNLMKPLSKWLPDSSLLIIVGLGLGYFLNQTTLSGVHLDSHA-FFLYLLPPIIFD 111
Query: 366 GGGHI-NHSIF 395
G + N ++F
Sbjct: 112 AGYFMPNRALF 122
>AF016447-15|AAR30208.1| 651|Caenorhabditis elegans Na/h exchanger
protein 3, isoform b protein.
Length = 651
Score = 31.5 bits (68), Expect = 0.78
Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +3
Query: 186 LRKLIFNVILILTLWVPEAPEVTITSIAMFVFLSVLSLYSILLQGDIDTIINLAPALKFN 365
L K++FN++ L+ W+P++ + I + + FL+ +L + L + L P + F+
Sbjct: 34 LAKILFNLMKPLSKWLPDSSLLIIVGLGLGYFLNQTTLSGVHLDSHA-FFLYLLPPIIFD 92
Query: 366 GGGHI-NHSIF 395
G + N ++F
Sbjct: 93 AGYFMPNRALF 103
>AF016447-14|AAG24015.2| 670|Caenorhabditis elegans Na/h exchanger
protein 3, isoform a protein.
Length = 670
Score = 31.5 bits (68), Expect = 0.78
Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +3
Query: 186 LRKLIFNVILILTLWVPEAPEVTITSIAMFVFLSVLSLYSILLQGDIDTIINLAPALKFN 365
L K++FN++ L+ W+P++ + I + + FL+ +L + L + L P + F+
Sbjct: 53 LAKILFNLMKPLSKWLPDSSLLIIVGLGLGYFLNQTTLSGVHLDSHA-FFLYLLPPIIFD 111
Query: 366 GGGHI-NHSIF 395
G + N ++F
Sbjct: 112 AGYFMPNRALF 122
>AC006769-16|AAF60588.2| 338|Caenorhabditis elegans Serpentine
receptor, class j protein20 protein.
Length = 338
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +3
Query: 174 YSNLLRKLIFNVILILTLWVPEAPEVTITSIAMFVFLSVLSLYSILL 314
+ NL + I N+ L+ L+ +PE+ S A V L+V++ YS++L
Sbjct: 168 FRNLHNESIDNINLVAGLFSEASPEIVQRSWAGIVLLTVIASYSMVL 214
>Z73898-2|CAC42388.1| 667|Caenorhabditis elegans Hypothetical
protein ZK822.3b protein.
Length = 667
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +3
Query: 186 LRKLIFNVILILTLWVPEAPEVTITSIAMFVFLSVLSLYSILLQGDIDTIINLAPALKFN 365
L K++FN++ ++ W P++ + I +A+ L SL L + L P + F+
Sbjct: 53 LAKILFNLMKPISKWCPDSSLLIIVGLALGWILHQTSLSGATLDSH-TFFLYLLPPIIFD 111
Query: 366 GGGHI-NHSIF 395
G + N ++F
Sbjct: 112 AGYFMPNRALF 122
>Z73898-1|CAC42389.1| 647|Caenorhabditis elegans Hypothetical
protein ZK822.3a protein.
Length = 647
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +3
Query: 186 LRKLIFNVILILTLWVPEAPEVTITSIAMFVFLSVLSLYSILLQGDIDTIINLAPALKFN 365
L K++FN++ ++ W P++ + I +A+ L SL L + L P + F+
Sbjct: 33 LAKILFNLMKPISKWCPDSSLLIIVGLALGWILHQTSLSGATLDSH-TFFLYLLPPIIFD 91
Query: 366 GGGHI-NHSIF 395
G + N ++F
Sbjct: 92 AGYFMPNRALF 102
>AF497835-1|AAM18113.1| 647|Caenorhabditis elegans putative Na-H
exchanger isoform 9b protein.
Length = 647
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +3
Query: 186 LRKLIFNVILILTLWVPEAPEVTITSIAMFVFLSVLSLYSILLQGDIDTIINLAPALKFN 365
L K++FN++ ++ W P++ + I +A+ L SL L + L P + F+
Sbjct: 33 LAKILFNLMKPISKWCPDSSLLIIVGLALGWILHQTSLSGATLDSH-TFFLYLLPPIIFD 91
Query: 366 GGGHI-NHSIF 395
G + N ++F
Sbjct: 92 AGYFMPNRALF 102
>AF497834-1|AAM18112.1| 667|Caenorhabditis elegans putative Na-H
exchanger isoform 9a protein.
Length = 667
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +3
Query: 186 LRKLIFNVILILTLWVPEAPEVTITSIAMFVFLSVLSLYSILLQGDIDTIINLAPALKFN 365
L K++FN++ ++ W P++ + I +A+ L SL L + L P + F+
Sbjct: 53 LAKILFNLMKPISKWCPDSSLLIIVGLALGWILHQTSLSGATLDSH-TFFLYLLPPIIFD 111
Query: 366 GGGHI-NHSIF 395
G + N ++F
Sbjct: 112 AGYFMPNRALF 122
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,963,268
Number of Sequences: 27780
Number of extensions: 255707
Number of successful extensions: 496
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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