Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_H09
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    26   6.1  
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar...    26   8.1  

>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
            factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = -1

Query: 642  LFNFLDNSESLPFHKCRPRFTMSEFSFSICPTIEFGWXTVC 520
            +F F D SES P    + R  +  F   +  T   G  T C
Sbjct: 991  IFGFEDTSESSPGKPSQLRLQIEAFDDELADTASLGSVTTC 1031


>SPAC23H3.03c |||nitrogen permease regulator
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 467 RIICNTR**APSNEFE*KQTVXHPNSIVGQIENENSLIVNL 589
           R +CN      +N +   Q + HP SI+G     N+LI N+
Sbjct: 68  RELCNKTITVCTNHY---QVIGHPISIIGSNYERNALIFNM 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,110,414
Number of Sequences: 5004
Number of extensions: 61340
Number of successful extensions: 85
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)