Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_H08
(948 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 36 0.011
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.24
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 1.3
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 23 4.0
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 8.9
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 35.5 bits (78), Expect = 0.011
Identities = 29/126 (23%), Positives = 29/126 (23%), Gaps = 5/126 (3%)
Frame = +3
Query: 504 PXXXPXXGXXXXPXPXPXPPPXXXXXGGXXXXPXXPXXPPXPXXXG--PXPXXXXXXPPP 677
P P P P PP G PP P G P P PP
Sbjct: 1093 PVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPV 1152
Query: 678 XXXXXXXXXXXPXXXXXXXPXXXXXXXPXXXXXXGXXPXXXXXXPPPXP---XXXPPXPP 848
P P P G P PP P PP PP
Sbjct: 1153 PAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPP 1212
Query: 849 XXXXPP 866
PP
Sbjct: 1213 PSTAPP 1218
Score = 28.7 bits (61), Expect = 1.3
Identities = 27/121 (22%), Positives = 27/121 (22%), Gaps = 1/121 (0%)
Frame = +1
Query: 508 PXPPXRGPXXXPXXXPXXPP-PXXXGGGXXXXPXXPXXPPXXXXXAXXXXXXXXXPPPXX 684
P P G P PP P G P P A PP
Sbjct: 1113 PVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVP 1172
Query: 685 XXXXXXPXXPXXXPXXPXXXXXPXPPXXXXXXGXXPXXXXXXPPPXPXXPPXXPPXXXXP 864
P P P P PP P PP PP P P
Sbjct: 1173 APSSGIPPVPKPAAGVP-----PVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLP 1227
Query: 865 P 867
P
Sbjct: 1228 P 1228
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.1 bits (67), Expect = 0.24
Identities = 27/130 (20%), Positives = 27/130 (20%)
Frame = +2
Query: 509 PXPPXGXXXXPPPXPXXXPXXXXXGGXFXXPPXXXXPPXXXXXXPXXXXXXXXXPPPXXX 688
P PP G PPP P P PP P PP
Sbjct: 352 PLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPAL---PPLGN 408
Query: 689 XXXXXPXPPXXXPXXPXXXXXXXPPXXXXXXXXPXXXXXXPPPXPPXXPPXXPXXXXXPX 868
P P P PP PP P PP P
Sbjct: 409 ASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPP 468
Query: 869 XXXXXXXXPP 898
PP
Sbjct: 469 LPPAAPAPPP 478
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 28.7 bits (61), Expect = 1.3
Identities = 17/46 (36%), Positives = 17/46 (36%)
Frame = +3
Query: 540 PXPXPXPPPXXXXXGGXXXXPXXPXXPPXPXXXGPXPXXXXXXPPP 677
P P P PPP G P P PP GP P PPP
Sbjct: 746 PAPIPVPPPAPIMGG-----PPPPPPPPGVAGAGPPP---PPPPPP 783
Score = 28.7 bits (61), Expect = 1.3
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +1
Query: 343 PPPXXFLXLXPPPPPPXXP 399
PPP PPPPPP P
Sbjct: 765 PPPPGVAGAGPPPPPPPPP 783
Score = 27.5 bits (58), Expect = 2.9
Identities = 13/42 (30%), Positives = 13/42 (30%)
Frame = +3
Query: 504 PXXXPXXGXXXXPXPXPXPPPXXXXXGGXXXXPXXPXXPPXP 629
P P G P P PPP GG P P P
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803
Score = 27.1 bits (57), Expect = 3.9
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +1
Query: 343 PPPXXFLXLXPPPPPP 390
PPP + PPPPPP
Sbjct: 752 PPPAPIMGGPPPPPPP 767
Score = 26.2 bits (55), Expect = 6.7
Identities = 16/55 (29%), Positives = 16/55 (29%)
Frame = +1
Query: 703 PXXPXXXPXXPXXXXXPXPPXXXXXXGXXPXXXXXXPPPXPXXPPXXPPXXXXPP 867
P P P P PP G P PPP P PP PP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPP------PPPPPGVAGAGPPPPPPPP 782
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 23.0 bits (47), Expect(2) = 4.0
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +1
Query: 373 PPPPPPXXP 399
PPPPPP P
Sbjct: 306 PPPPPPPPP 314
Score = 22.2 bits (45), Expect(2) = 4.0
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +1
Query: 367 LXPPPPPP 390
L PPPPPP
Sbjct: 305 LPPPPPPP 312
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.8 bits (54), Expect = 8.9
Identities = 10/26 (38%), Positives = 10/26 (38%)
Frame = +3
Query: 789 PXXXXXXPPPXPXXXPPXPPXXXXPP 866
P PPP P PP P PP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.155 0.569
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,316,455
Number of Sequences: 5004
Number of extensions: 16611
Number of successful extensions: 130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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