Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_H04
         (905 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    36   0.008
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    34   0.032
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.17 
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   0.34 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   0.91 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.91 
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe...    29   1.2  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    28   1.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.8  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 35.9 bits (79), Expect = 0.008
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = +1

Query: 622 PPPPPPXFXXGGGXKXXPPPPP 687
           PPPPPP    G G    PPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPP 783



 Score = 33.1 bits (72), Expect = 0.056
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = +1

Query: 622 PPPPPPXFXXGGGXKXXPPPPP 687
           PPPPPP     G     PPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPP 782



 Score = 30.3 bits (65), Expect = 0.39
 Identities = 17/55 (30%), Positives = 17/55 (30%), Gaps = 2/55 (3%)
 Frame = +3

Query: 303 PPPXXXXXPPKKXPPPPXXXGPXFXGXXXXXPP--XKXXXPPPPKXXPGXXXXGG 461
           PPP      P   P P     P   G     PP       PPPP   P     GG
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 29.5 bits (63), Expect = 0.69
 Identities = 20/62 (32%), Positives = 22/62 (35%), Gaps = 5/62 (8%)
 Frame = +3

Query: 342 PPPPXXXGPXFXGXXXXXPPXKXXX--PPPPKXXPGXXXXGGGXXXPXXXPP---GGGPX 506
           PPPP    P         PP       PPPP   PG    G G   P   PP    GG  
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPG--VAGAGPPPPPPPPPAVSAGGSR 791

Query: 507 FF 512
           ++
Sbjct: 792 YY 793



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +1

Query: 622 PPPPPPXFXXGGGXKXXPPPP 684
           PPPPPP     GG +   P P
Sbjct: 777 PPPPPPPAVSAGGSRYYAPAP 797



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +1

Query: 622 PPPPPPXFXXGGGXKXXPPPPPXXKKK 702
           PPPPPP    GG     P P    + K
Sbjct: 778 PPPPPPAVSAGGSRYYAPAPQAEPEPK 804



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 16/50 (32%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
 Frame = +2

Query: 344 PPPXXXGP-PFXXXXPIXPPPKXXXPPPPKXXXXGXKXGGGXXXPXXXPP 490
           PPP    P P     P+ PP      PPP     G    G    P   PP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGV--AGAGPPPPPPPP 782


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 33.9 bits (74), Expect = 0.032
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = +1

Query: 622 PPPPPPXFXXGGGXKXXPPPPPXXKKKXK 708
           PPPPPP F      +  PPPPP   KK K
Sbjct: 11  PPPPPPGFEPPS--QPPPPPPPGYVKKRK 37



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 303 PPPXXXXXPPKKXPPPP 353
           PPP     PP + PPPP
Sbjct: 12  PPPPPGFEPPSQPPPPP 28



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 15/34 (44%), Positives = 15/34 (44%)
 Frame = +2

Query: 326 PPKKXXPPPXXXGPPFXXXXPIXPPPKXXXPPPP 427
           PP    PPP    PP     P  PPP    PPPP
Sbjct: 5   PPGNPPPPP----PPPGFEPPSQPPP----PPPP 30


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 26/82 (31%), Positives = 27/82 (32%), Gaps = 1/82 (1%)
 Frame = -3

Query: 543 GEXGGXXKXXXKXXXPPXGGXXWGXFXPPPXFXPXXXXLGGGGXXFXGG-GXXGXXXXXG 367
           G  GG           P G   +G F             GGG   F GG G  G     G
Sbjct: 188 GGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFG-----G 242

Query: 366 GPXXXGGGXFFLGGXXXXXGGG 301
           GP   GGG    GG     GGG
Sbjct: 243 GPGGFGGGLGGFGGGPGGFGGG 264


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 25.4 bits (53), Expect(2) = 0.34
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +1

Query: 622  PPPPPPXFXXGGGXKXXPP 678
            PPPPPP      G K   P
Sbjct: 947  PPPPPPPLVSAAGGKFVSP 965



 Score = 23.4 bits (48), Expect(2) = 0.34
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 619 FPPPPPP 639
           FPPPPPP
Sbjct: 944 FPPPPPP 950


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 29.1 bits (62), Expect = 0.91
 Identities = 13/41 (31%), Positives = 13/41 (31%)
 Frame = +3

Query: 306 PPXXXXXPPKKXPPPPXXXGPXFXGXXXXXPPXKXXXPPPP 428
           PP     PP   P  P    P         PP     PPPP
Sbjct: 165 PPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPP 205



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 14/42 (33%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
 Frame = +2

Query: 302 PPPXXXXXPP--KKXXPPPXXXGPPFXXXXPIXPPPKXXXPP 421
           PPP     PP   K  P P    PP     P+  PP     P
Sbjct: 150 PPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLP 191


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 0.91
 Identities = 13/42 (30%), Positives = 13/42 (30%)
 Frame = +2

Query: 302 PPPXXXXXPPKKXXPPPXXXGPPFXXXXPIXPPPKXXXPPPP 427
           PP      P     PP     PP     P  PP     P PP
Sbjct: 436 PPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPP 477



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/41 (29%), Positives = 13/41 (31%)
 Frame = +3

Query: 306 PPXXXXXPPKKXPPPPXXXGPXFXGXXXXXPPXKXXXPPPP 428
           PP          PPPP        G     P  +   PPPP
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365


>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +2

Query: 416 PPPPKXXXXGXKXGGGXXXPXXXPPXG 496
           PPPP+    G + GGG   P   P  G
Sbjct: 99  PPPPRGPLFGPRIGGGHHGPLHGPHGG 125


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/49 (30%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
 Frame = +3

Query: 303 PPPXXXXXPPKKXPPPP--XXXGPXFXGXXXXXPPXKXXXPPPPKXXPG 443
           PPP     P +  PPPP     G           P +   PPP    PG
Sbjct: 208 PPPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPG 256



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/49 (30%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
 Frame = +2

Query: 302 PPPXXXXXPPKKXXPPPXXXGP-PFXXXXPIXPPPKXXXPPPPKXXXXG 445
           PPP     P +   PPP    P       P+   P    PPPP     G
Sbjct: 221 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPG 269



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/49 (30%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
 Frame = +2

Query: 302 PPPXXXXXPPKKXXPPPXXXGP-PFXXXXPIXPPPKXXXPPPPKXXXXG 445
           PPP     P +   PPP    P       P+   P    PPPP     G
Sbjct: 234 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPG 282



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/49 (30%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
 Frame = +3

Query: 303 PPPXXXXXPPKKXPPPP--XXXGPXFXGXXXXXPPXKXXXPPPPKXXPG 443
           PPP     P +  PPPP     G           P +   PPP    PG
Sbjct: 247 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPG 295



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/49 (30%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
 Frame = +2

Query: 302 PPPXXXXXPPKKXXPPPXXXGP-PFXXXXPIXPPPKXXXPPPPKXXXXG 445
           PPP     P +   PPP    P       P+   P    PPPP     G
Sbjct: 260 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPG 308



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/49 (30%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
 Frame = +2

Query: 302 PPPXXXXXPPKKXXPPPXXXGP-PFXXXXPIXPPPKXXXPPPPKXXXXG 445
           PPP     P +   PPP    P       P+   P    PPPP     G
Sbjct: 273 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPG 321



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/49 (30%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
 Frame = +2

Query: 302 PPPXXXXXPPKKXXPPPXXXGP-PFXXXXPIXPPPKXXXPPPPKXXXXG 445
           PPP     P +   PPP    P       P+   P    PPPP     G
Sbjct: 286 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPG 334



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
 Frame = +2

Query: 302 PPPXXXXXPPKKXXPPPXXXGP-PFXXXXPIXPPPKXXXPPPP 427
           PPP     P +   PPP    P       P+   P    PPPP
Sbjct: 299 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 341


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 16/50 (32%), Positives = 17/50 (34%)
 Frame = +2

Query: 302  PPPXXXXXPPKKXXPPPXXXGPPFXXXXPIXPPPKXXXPPPPKXXXXGXK 451
            PPP     PP    PPP    PP     P  PPP       P     G +
Sbjct: 1707 PPP-----PPMSVPPPPS--APPMPAGPPSAPPPPLPASSAPSVPNPGDR 1749



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
 Frame = +2

Query: 344  PP--PXXXGPPFXXXXPIXPPPKXXXPPPP 427
            PP  P    PP     P  PPP    PPPP
Sbjct: 1690 PPVRPQSAAPP-QMSAPTPPPPPMSVPPPP 1718


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,797,064
Number of Sequences: 5004
Number of extensions: 29065
Number of successful extensions: 209
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)