Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_H02
         (892 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0611 - 8029101-8029205,8029985-8030107,8030191-8030556,803...    32   0.53 
04_04_0946 - 29579779-29580004,29580098-29580210                       30   2.1  
12_01_0655 + 5546293-5546478,5546760-5546877,5550697-5550776,555...    30   2.8  
01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117...    29   5.0  
07_03_1530 + 27502546-27502671,27503487-27503561,27504670-275047...    29   6.6  
04_03_0434 + 15889712-15889797,15890086-15890287,15891184-158913...    28   8.7  

>04_01_0611 -
           8029101-8029205,8029985-8030107,8030191-8030556,
           8030639-8031124
          Length = 359

 Score = 32.3 bits (70), Expect = 0.53
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 644 HRGEPVICKFECFWVSLVSPHGR 712
           H+  P I  FEC+W + V  HGR
Sbjct: 317 HKTAPRIASFECYWSTFVGAHGR 339


>04_04_0946 - 29579779-29580004,29580098-29580210
          Length = 112

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +1

Query: 283 KHRRHNRPAVYTIA---QHRSHKYRSSRGHHEHPDTVP 387
           KHRR  R A + ++   +HR+H +   R HH+ P   P
Sbjct: 59  KHRRKKRAAAHAVSVRKEHRNH-HHHHRHHHQQPQPRP 95


>12_01_0655 +
           5546293-5546478,5546760-5546877,5550697-5550776,
           5551329-5552345,5552523-5553344,5553528-5553800
          Length = 831

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 269 CILKRNTDATIGLQFTPLHNIDRINTEVHGVIMNIPIPFPLP 394
           C+   N D  +   F P  ++D IN    GV++ +  P+P P
Sbjct: 448 CVAFTNVDTKLISVFRPFRDLDIINQGSEGVVVKLLQPWPPP 489


>01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,
            1171148-1171398,1171442-1171687,1172220-1172415,
            1172796-1172876,1172966-1173169,1173671-1173880,
            1173953-1174174,1174437-1174480,1174974-1175052,
            1175066-1175227,1175337-1175564,1175786-1175815,
            1175905-1176273,1176356-1176571,1177202-1177683,
            1177930-1177975
          Length = 1352

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
 Frame = +1

Query: 214  TSDSPQRDGERMRRVVQSLYTE-----EKHRRHNRPAVYTIAQHRSHKYRSSRGHHEHPD 378
            TSDS      R R + +S         EK R   RP  +    HR H +R    HH+H  
Sbjct: 1274 TSDSNNHKHRRSRSLEESSDDAAAGEYEKVRNGKRP--HKTGHHRHH-HRHHHHHHDHRS 1330

Query: 379  TVPPAGV*RVQGQRA 423
            +  P    R  GQ+A
Sbjct: 1331 SSEPNDKKRQDGQKA 1345


>07_03_1530 +
           27502546-27502671,27503487-27503561,27504670-27504746,
           27505576-27507522,27508478-27508946,27509898-27510079,
           27510746-27511208,27511295-27511691,27511810-27511937,
           27512106-27512273,27512452-27512559,27512830-27512838
          Length = 1382

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 323 HNIDRINTEVHGVIMNIPIPFPLPESDACKDNGL 424
           H++D  + E H ++ +IP   PL   +AC  N L
Sbjct: 585 HSLDTPDGEKHILLKDIPSTIPLDLKNACSQNSL 618


>04_03_0434 +
           15889712-15889797,15890086-15890287,15891184-15891323,
           15891420-15891559,15891762-15891913,15892773-15892902,
           15892990-15893141
          Length = 333

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 458 YKATLPILKSYPKVTVEVKWELQSEHGDL 544
           +KATL +L SY     E KWE ++   DL
Sbjct: 174 FKATLELLVSYKDQVAESKWENEAAAEDL 202


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,039,133
Number of Sequences: 37544
Number of extensions: 484890
Number of successful extensions: 1276
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1273
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)