Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_H02
         (892 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69635-6|CAA93461.1|  695|Caenorhabditis elegans Hypothetical pr...    33   0.36 
Z74036-3|CAA98488.1|  517|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U40409-3|ABO16455.1|  681|Caenorhabditis elegans Related to yeas...    29   5.9  
U40409-2|AAA81388.3|  759|Caenorhabditis elegans Related to yeas...    29   5.9  
U40409-1|ABO16456.1|  807|Caenorhabditis elegans Related to yeas...    29   5.9  
Z71177-1|CAA94865.3|  355|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>Z69635-6|CAA93461.1|  695|Caenorhabditis elegans Hypothetical
           protein F19B6.4 protein.
          Length = 695

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = +2

Query: 227 HNVTVSGCEESSSHCILKRNTDA--TIGLQF 313
           HN T+SGCE +SS   LK + D+  T G++F
Sbjct: 625 HNSTISGCESNSSVATLKMSIDSNCTTGIEF 655


>Z74036-3|CAA98488.1|  517|Caenorhabditis elegans Hypothetical
           protein F55C10.4 protein.
          Length = 517

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +2

Query: 206 GSKLATVHNVTVSGCEESSSHCILKRNTDATIGLQFTPLHNIDRINTEVHGVIMNIPIPF 385
           G+  +T H    S    S+ H I++R     I  Q   + N+D++  E  GV++ IP   
Sbjct: 93  GTNQSTHHTTRAS---LSTEHRIIERCDYMLIIAQTNSIDNMDKLEIEAEGVLVEIPYKK 149

Query: 386 PL 391
           P+
Sbjct: 150 PI 151


>U40409-3|ABO16455.1|  681|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 41, isoform b
           protein.
          Length = 681

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 19/55 (34%), Positives = 29/55 (52%)
 Frame = +2

Query: 182 EAKFFKDCGSKLATVHNVTVSGCEESSSHCILKRNTDATIGLQFTPLHNIDRINT 346
           E + F DC S ++TV  +T     ESS+  ILK +    +GL+   L + D I +
Sbjct: 168 EGEDFDDCASVISTVTTLTAL---ESSACTILKTSVIRPLGLKEFELQSEDMIES 219


>U40409-2|AAA81388.3|  759|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 41, isoform a
           protein.
          Length = 759

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 19/55 (34%), Positives = 29/55 (52%)
 Frame = +2

Query: 182 EAKFFKDCGSKLATVHNVTVSGCEESSSHCILKRNTDATIGLQFTPLHNIDRINT 346
           E + F DC S ++TV  +T     ESS+  ILK +    +GL+   L + D I +
Sbjct: 168 EGEDFDDCASVISTVTTLTAL---ESSACTILKTSVIRPLGLKEFELQSEDMIES 219


>U40409-1|ABO16456.1|  807|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 41, isoform c
           protein.
          Length = 807

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 19/55 (34%), Positives = 29/55 (52%)
 Frame = +2

Query: 182 EAKFFKDCGSKLATVHNVTVSGCEESSSHCILKRNTDATIGLQFTPLHNIDRINT 346
           E + F DC S ++TV  +T     ESS+  ILK +    +GL+   L + D I +
Sbjct: 216 EGEDFDDCASVISTVTTLTAL---ESSACTILKTSVIRPLGLKEFELQSEDMIES 267


>Z71177-1|CAA94865.3|  355|Caenorhabditis elegans Hypothetical
           protein AC3.1 protein.
          Length = 355

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = -2

Query: 339 MRSMLCNGVNCRPIVASVFLFSIQ*LDDSSHPLTVTLWTVASLDPQSLKN 190
           +RS+L     C  IV    LFS+  +    H    T WT+ +L   S  N
Sbjct: 252 LRSLLAQFTTCFLIVGPASLFSLLVVIRYEHSQVATHWTIVALTLHSSAN 301


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,656,956
Number of Sequences: 27780
Number of extensions: 414038
Number of successful extensions: 1200
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1197
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)