Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_G23
         (937 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.71 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   1.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.9  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   5.0  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.5 bits (63), Expect = 0.71
 Identities = 18/52 (34%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
 Frame = +3

Query: 657  PPPXRPXXYXPP-PPPWXXPXRRAXXXGFPXXXPPAKKXQXPL-SXXXPPRP 806
            PP  +P    PP PPP   P       G P   PP+     P  S   PP P
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVP 1230


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -3

Query: 449 PPFPRVXGXXXPPTXPPPP 393
           PP P V G   PP  PPPP
Sbjct: 765 PPPPGVAGAGPPPPPPPPP 783



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 18/59 (30%), Positives = 18/59 (30%)
 Frame = +3

Query: 630 PXGXXXPTGPPPXRPXXYXPPPPPWXXPXRRAXXXGFPXXXPPAKKXQXPLSXXXPPRP 806
           P     P   PP  P    PPPPP   P       G P   PP        S    P P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPP---PPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/25 (48%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
 Frame = +3

Query: 630 PXGXXXPTGPPP-XRPXXYXPPPPP 701
           P G   P  PPP   P    PPPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPP 29


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 27/104 (25%), Positives = 31/104 (29%), Gaps = 2/104 (1%)
 Frame = +2

Query: 578 QKNXXXXXPGGGRXRXXAPGGXXSHRT--PPPAXXXLXXPPXSVAXTPXEGXGXXFPXXX 751
           +K      P   R R   P G  S  +  PPP          S+   P    G   P   
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQ---GRSAPPPP 364

Query: 752 PPRKKXTXPPFXXXXXPPLXKNXLXXKPPMTXXAPPXRXPTXAP 883
           PPR      P      PPL  +     PP    A P R     P
Sbjct: 365 PPRSA----PSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALP 404


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 20/68 (29%), Positives = 23/68 (33%), Gaps = 2/68 (2%)
 Frame = +3

Query: 648 PTGPPPXRPXXYXPPPPPWXXPXRRAXXXGFPXXXPPAKKXQXPLS--XXXPPRPXGKXP 821
           PT  PP RP    PPP P   P   +     P   PP  +   P+      P  P    P
Sbjct: 140 PTSAPP-RPSI--PPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPP 196

Query: 822 XQXNXP*P 845
                P P
Sbjct: 197 MPPKVPPP 204



 Score = 25.8 bits (54), Expect = 8.8
 Identities = 17/67 (25%), Positives = 21/67 (31%), Gaps = 3/67 (4%)
 Frame = +3

Query: 609 GGGXEXXPXGXXXPTGPPPXRPXXYXPPP---PPWXXPXRRAXXXGFPXXXPPAKKXQXP 779
           GG  +    G    +  PP  P    P     PP   P R +     P   PP      P
Sbjct: 107 GGMPKLRHIGKSSASAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPP 166

Query: 780 LSXXXPP 800
           +    PP
Sbjct: 167 IPSSLPP 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.310    0.145    0.497 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,905,450
Number of Sequences: 5004
Number of extensions: 25234
Number of successful extensions: 74
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)