Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_G21
(894 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0850 - 25354002-25354391,25354480-25354575,25355352-253556... 45 7e-05
04_04_0156 + 23160681-23160862,23161090-23161179,23163145-231634... 43 3e-04
10_08_0654 - 19616426-19616656,19617046-19617249,19617654-196178... 35 0.10
11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257 33 0.31
11_06_0739 + 26814463-26814809,26814891-26815217,26815458-26817636 32 0.54
06_01_0903 - 6939672-6939782,6940051-6940110,6940221-6940322,694... 32 0.71
04_04_1541 + 34249778-34249882,34249964-34250115,34250225-342503... 31 1.2
02_05_0888 - 32517876-32518087,32518320-32518694,32519551-325196... 30 2.2
06_01_0081 + 646100-646346,646432-646848,647067-647170,648152-64... 29 6.6
03_06_0476 + 34199577-34199638,34200267-34200397,34200535-342006... 28 8.7
>06_03_0850 -
25354002-25354391,25354480-25354575,25355352-25355634,
25357213-25357799
Length = 451
Score = 45.2 bits (102), Expect = 7e-05
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +1
Query: 175 SANREDTLRQFCDVTGADEDRSKFFLESSNWQLDVALSSFYENG-GNADEVPAN 333
+A + + FC VT A + FFLES NW L+ A+ SFY++ G+A A+
Sbjct: 12 AAEAQSLVESFCGVTSATPQEAAFFLESHNWALESAVRSFYDSADGDASAAAAD 65
Score = 39.9 bits (89), Expect = 0.003
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +3
Query: 732 IESQQQEQVRLXRLCLYREGFTVDAGPLRPYSDPXNAEFLXXIPRGXXPS 881
+ Q E + + + + GFTV+ GPLR + DP NA FL I PS
Sbjct: 251 VAPQSPESI-VHNIYFWTNGFTVNDGPLRSFDDPANASFLKSIKNSECPS 299
>04_04_0156 +
23160681-23160862,23161090-23161179,23163145-23163433,
23164574-23164669,23164755-23165123
Length = 341
Score = 43.2 bits (97), Expect = 3e-04
Identities = 18/39 (46%), Positives = 23/39 (58%)
Frame = +3
Query: 762 LXRLCLYREGFTVDAGPLRPYSDPXNAEFLXXIPRGXXP 878
L + + GFTVD GPLR Y DP NA+F+ I + P
Sbjct: 157 LHNIQFWNNGFTVDDGPLRDYDDPANADFIESIKKSQCP 195
>10_08_0654 -
19616426-19616656,19617046-19617249,19617654-19617824,
19619617-19620411
Length = 466
Score = 34.7 bits (76), Expect = 0.10
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 172 MSANREDTLRQFCDVTG-ADEDRSKFFLESSNWQLDVALSSFYENGGNADEVPANP 336
M+ +D + F VTG +D D L + NW L +A+SS N + D P+ P
Sbjct: 1 MAETVDDKVSYFQAVTGISDHDLCTEILAAHNWDLQLAVSSITANPSSPDPAPSAP 56
>11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257
Length = 921
Score = 33.1 bits (72), Expect = 0.31
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +2
Query: 110 RVFLFKTVFYKLIQNIYSKLPCLRIGKIHYVSFVMLP 220
R FL + LI NI KLPCLR+ + Y LP
Sbjct: 393 RHFLHTSSLLNLIDNILPKLPCLRVLDLSYTQLESLP 429
>11_06_0739 + 26814463-26814809,26814891-26815217,26815458-26817636
Length = 950
Score = 32.3 bits (70), Expect = 0.54
Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = +2
Query: 533 GPGNRS*GQVKA--GKISSLKCSRASESEEQSSLKTNQHP---VEAVVEGASSPELA 688
G G S GQ + G SSLK R +E S L+ HP V A E AS P +A
Sbjct: 892 GRGKSSIGQESSEDGSDSSLKRMRLAEPSSSSQLQVTGHPHPVVVAATEAASQPSMA 948
>06_01_0903 -
6939672-6939782,6940051-6940110,6940221-6940322,
6940464-6940513,6940686-6940750,6940849-6940931,
6941117-6941140,6941798-6941856,6942041-6942174,
6942823-6942884,6942908-6942976
Length = 272
Score = 31.9 bits (69), Expect = 0.71
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 190 DTLRQFCDVTGADEDRSKFFLESSNWQLDVALSSFY 297
D ++QF +TGA E + L++S+W L+ A FY
Sbjct: 32 DKVQQFMTITGASEKVALQALKASDWHLEGAFDFFY 67
>04_04_1541 +
34249778-34249882,34249964-34250115,34250225-34250350,
34251868-34252030,34252601-34252678,34252749-34252847,
34253045-34253188,34253344-34253446,34255303-34255646,
34255727-34255891
Length = 492
Score = 31.1 bits (67), Expect = 1.2
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +1
Query: 178 ANREDTLRQFCDVT-GADEDRSKFFLESSNWQLDVALSSFYENGGNADEVPANPTSAAS 351
A +E + F ++ G + + FL+ ++W L+ AL FY +G A P+ AA+
Sbjct: 9 AEKESLVTSFLEIAAGQTPETATQFLQMTSWHLEEALQLFYIDGEAALAAHPAPSPAAA 67
>02_05_0888 -
32517876-32518087,32518320-32518694,32519551-32519638,
32520145-32520384,32521033-32521149,32521213-32521606,
32521752-32521998,32522086-32522315,32522768-32522823,
32522903-32523094,32523274-32523376,32523478-32523544,
32524312-32525154,32525547-32525670,32525965-32526213,
32526354-32526443,32526530-32526649,32526664-32526738,
32527001-32527147,32527255-32527365,32527446-32527667,
32527777-32527896,32527971-32528270,32528355-32528480,
32529246-32529360,32529556-32530019,32530119-32530253,
32530684-32530788,32530876-32531053,32531143-32531864
Length = 2188
Score = 30.3 bits (65), Expect = 2.2
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +1
Query: 256 SSNWQLDV-ALSSFYENGGNADEVPANPTSAA 348
SSNW L V A YE GG EV + P +A+
Sbjct: 358 SSNWDLSVGAAELIYEQGGYFSEVSSTPATAS 389
>06_01_0081 +
646100-646346,646432-646848,647067-647170,648152-648352,
649088-649798,649944-650674,650942-651017,651096-651182,
651429-651517,651917-651973,652402-652510,652590-652649,
652835-652919,653178-653242,653694-653753,653869-653913,
654697-654800,654877-655099
Length = 1156
Score = 28.7 bits (61), Expect = 6.6
Identities = 21/64 (32%), Positives = 31/64 (48%)
Frame = +2
Query: 503 VRHFMLGAQSGPGNRS*GQVKAGKISSLKCSRASESEEQSSLKTNQHPVEAVVEGASSPE 682
+ F L +S P S G++ K+SSLKC+ S E + N H V++ A S
Sbjct: 509 IPRFFLPMESLPLTSS-GKIDYMKLSSLKCALESCETETERITVNPH--LQVIKKAFSDA 565
Query: 683 LAID 694
L +D
Sbjct: 566 LLVD 569
>03_06_0476 +
34199577-34199638,34200267-34200397,34200535-34200698,
34201007-34201117,34201308-34201387,34201489-34201639,
34201736-34201829,34202421-34202509,34203672-34203745,
34203859-34204021,34204445-34204530,34205011-34205094,
34205186-34205366,34205837-34205887
Length = 506
Score = 28.3 bits (60), Expect = 8.7
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +1
Query: 160 FEITMSANREDTLRQFCDVTGADEDRSKFFLESSNWQLDVALSSFYENGGNADEVPANPT 339
++++++ D +RQ D + A+ + S S W L AL F N GN E+P T
Sbjct: 256 YKVSVTPGISDEIRQIIDDSSAEVNSSS----SDFWVLVAALKEFIANEGNG-ELPLEGT 310
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,561,149
Number of Sequences: 37544
Number of extensions: 390217
Number of successful extensions: 1098
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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