Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_G21
         (894 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024089-4|AAK09073.2|  239|Caenorhabditis elegans Hypothetical ...    33   0.21 
AL024499-1|CAB54261.2|  295|Caenorhabditis elegans Hypothetical ...    32   0.48 
AC024876-9|AAF60887.2|  301|Caenorhabditis elegans Hypothetical ...    32   0.64 
Z46787-16|CAO78703.1|  821|Caenorhabditis elegans Hypothetical p...    31   1.5  
Z35596-2|CAO78713.1|  821|Caenorhabditis elegans Hypothetical pr...    31   1.5  
U41548-2|AAA83204.1|  399|Caenorhabditis elegans Hypothetical pr...    29   4.5  

>AC024089-4|AAK09073.2|  239|Caenorhabditis elegans Hypothetical
           protein C36E6.2 protein.
          Length = 239

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = +1

Query: 181 NREDTLRQFCDVTGAD---EDRSKFFLESSNWQLDVALSSFYENGGN 312
           +RE+ + +F ++        D + F+L+ +NW L  A+S FY+  G+
Sbjct: 19  DRENLIHKFEEIISPQMIPHDLAAFYLDLANWNLSTAISVFYDQNGD 65


>AL024499-1|CAB54261.2|  295|Caenorhabditis elegans Hypothetical
           protein H38K22.2a protein.
          Length = 295

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = +1

Query: 172 MSANREDTLRQFCDVTGADEDRSKFFLESSNWQLDVALSSFYEN 303
           + ++++  LRQF   T   E  S  FL  +NW ++ A++ +++N
Sbjct: 4   LKSDQKTKLRQFVQWTQVTEAVSLNFLAKANWNIEYAMTLYFDN 47


>AC024876-9|AAF60887.2|  301|Caenorhabditis elegans Hypothetical
           protein Y94H6A.9a protein.
          Length = 301

 Score = 31.9 bits (69), Expect = 0.64
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 771 LCLYREGFTVDAGPLRPYSDPXNAEFLXXIPRGXXP 878
           L L+ +G +++ GPL    DP   EFL  + +G  P
Sbjct: 94  LHLWSDGLSIEDGPLMSRQDPRTIEFLESVGKGEIP 129


>Z46787-16|CAO78703.1|  821|Caenorhabditis elegans Hypothetical
           protein C30D11.1b protein.
          Length = 821

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = -3

Query: 325 EPHLHYH-RSHRNLKEQHLIASLRILKRIYCD--LRQHR*HHKTDVMYLPYSQTW*FRIY 155
           +P L  H + H N+   H +A L +   +  +  L+  R HH T V Y P+   W + I 
Sbjct: 59  QPALRCHSKQHHNILSPHALAVLSLGADVLPEYKLQPTRIHHCTIVHYSPFKAVWDWIIL 118

Query: 154 IL 149
           +L
Sbjct: 119 LL 120


>Z35596-2|CAO78713.1|  821|Caenorhabditis elegans Hypothetical
           protein C30D11.1b protein.
          Length = 821

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = -3

Query: 325 EPHLHYH-RSHRNLKEQHLIASLRILKRIYCD--LRQHR*HHKTDVMYLPYSQTW*FRIY 155
           +P L  H + H N+   H +A L +   +  +  L+  R HH T V Y P+   W + I 
Sbjct: 59  QPALRCHSKQHHNILSPHALAVLSLGADVLPEYKLQPTRIHHCTIVHYSPFKAVWDWIIL 118

Query: 154 IL 149
           +L
Sbjct: 119 LL 120


>U41548-2|AAA83204.1|  399|Caenorhabditis elegans Hypothetical
           protein M02F4.1 protein.
          Length = 399

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -3

Query: 793 KPSRYRHSLXSLTCSCCWDSMQTLARD-HLQFVLIYSQLRR 674
           +P R    L  LTC  C D ++TL  D    F  IYS  RR
Sbjct: 273 RPKREVLDLPPLTCPDCPDGIETLGSDLDFAFSTIYSWTRR 313


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,517,612
Number of Sequences: 27780
Number of extensions: 339527
Number of successful extensions: 927
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)