Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_G20
         (839 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0276 + 21980147-21980285,21980369-21980550,21980867-219811...    35   0.070
09_06_0275 + 21976990-21977140,21977239-21977388,21977775-219779...    35   0.070
11_01_0588 - 4679813-4680970                                           29   3.5  
11_01_0579 + 4616191-4617348                                           29   3.5  
06_03_0905 + 25843547-25844314                                         28   8.1  

>09_06_0276 +
           21980147-21980285,21980369-21980550,21980867-21981137,
           21981263-21981351,21981474-21981538,21981656-21981758,
           21982215-21982325,21982441-21982509,21982553-21982687
          Length = 387

 Score = 35.1 bits (77), Expect = 0.070
 Identities = 20/60 (33%), Positives = 33/60 (55%)
 Frame = +2

Query: 479 TLKAINAYPIKSCAPVMLEKAECSILGLKDGWLRDRVVMVIDEKNNFVTARAFPELLTVQ 658
           T+K+I  YPIKSC  + + +A  +  GL+  W  DR  +V++      T R  P+L  ++
Sbjct: 21  TVKSIVVYPIKSCRGISVPQAAITSTGLR--W--DRPWLVMNSAGRAFTQRVEPKLALIE 76


>09_06_0275 +
           21976990-21977140,21977239-21977388,21977775-21977951,
           21978073-21978161,21978259-21978323,21978445-21978547,
           21979042-21979152,21979306-21979374,21979558-21979614
          Length = 323

 Score = 35.1 bits (77), Expect = 0.070
 Identities = 20/60 (33%), Positives = 33/60 (55%)
 Frame = +2

Query: 479 TLKAINAYPIKSCAPVMLEKAECSILGLKDGWLRDRVVMVIDEKNNFVTARAFPELLTVQ 658
           T+++I  YPIKSC  + + +A  +  G +  W  DR  +V++ K    T R  P+L  V+
Sbjct: 25  TVRSILIYPIKSCRGISVPQAPITSTGFR--W--DRQWVVVNSKGRAYTQRVEPKLALVE 80


>11_01_0588 - 4679813-4680970
          Length = 385

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 505 WISVDSFERSDFSPVFGYFYLLVFLTVQAISV 410
           WI++  F RSD  P+ G   +++F+ V+ I +
Sbjct: 114 WIAMTLFPRSDLRPIRGDELIIIFVMVRKIKI 145


>11_01_0579 + 4616191-4617348
          Length = 385

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 505 WISVDSFERSDFSPVFGYFYLLVFLTVQAISV 410
           WI++  F RSD  P+ G   +++F+ V+ I +
Sbjct: 114 WIAMTLFPRSDLRPIRGDELIIIFVMVRKIKI 145


>06_03_0905 + 25843547-25844314
          Length = 255

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 10/26 (38%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
 Frame = -3

Query: 738 CCNL--G*INMQSSICACFTVRMELL 667
           CC L  G + +++++C C T+R++LL
Sbjct: 202 CCPLLEGLVELEAAVCLCTTIRLKLL 227


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,754,135
Number of Sequences: 37544
Number of extensions: 317190
Number of successful extensions: 644
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)