Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_G18
(1420 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 35 0.18
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063... 34 0.31
12_02_0299 - 17051570-17052474,17053542-17053755 33 0.72
12_02_1174 - 26696869-26698191 30 3.9
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 30 3.9
>10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 34.7 bits (76), Expect = 0.18
Identities = 26/84 (30%), Positives = 28/84 (33%)
Frame = +1
Query: 1042 PXXPSPXXXXXXXPPXXXPSPSSTXXLSVXXXPXXXPPXASXXLLFPQXXLPPPXXRXXA 1221
P P P PP P PS L PP FP PPP R +
Sbjct: 623 PPPPLPNHSVLPPPPPPPPPPSLPNRL------VPPPPAPGIGNKFPAPPPPPPPPRSSS 676
Query: 1222 XXPXLTFXISRRPLHXXPXPPPPL 1293
P S+ P P PPPPL
Sbjct: 677 RTPTGAATSSKGP---PPPPPPPL 697
Score = 32.7 bits (71), Expect = 0.72
Identities = 22/83 (26%), Positives = 24/83 (28%)
Frame = +1
Query: 1042 PXXPSPXXXXXXXPPXXXPSPSSTXXLSVXXXPXXXPPXASXXLLFPQXXLPPPXXRXXA 1221
P P PP P P SV P PP + +L P PPP
Sbjct: 589 PPPPPLPNCLVPSPPPPPPPPPILPNRSVPPPPPPPPPLPNHSVLPPPPPPPPPPSLPNR 648
Query: 1222 XXPXLTFXISRRPLHXXPXPPPP 1290
P P PPPP
Sbjct: 649 LVPPPPAPGIGNKFPAPPPPPPP 671
Score = 31.9 bits (69), Expect = 1.3
Identities = 21/66 (31%), Positives = 24/66 (36%)
Frame = +1
Query: 1096 PSPSSTXXLSVXXXPXXXPPXASXXLLFPQXXLPPPXXRXXAXXPXLTFXISRRPLHXXP 1275
PSPS T P PP + P PPP P + S+ P P
Sbjct: 535 PSPSPTAAAPPPPPPPPPPPSGNKPAFSPP---PPPPPPPPPPLPQSNYASSQPP---PP 588
Query: 1276 XPPPPL 1293
PPPPL
Sbjct: 589 PPPPPL 594
Score = 31.9 bits (69), Expect = 1.3
Identities = 20/70 (28%), Positives = 22/70 (31%)
Frame = +1
Query: 1081 PPXXXPSPSSTXXLSVXXXPXXXPPXASXXLLFPQXXLPPPXXRXXAXXPXLTFXISRRP 1260
PP P P S S P PP + + P PPP P P
Sbjct: 569 PPPPPPLPQSNYASSQPPPPPPPPPLPNCLVPSPPPPPPPPPILPNRSVPPPPPPPPPLP 628
Query: 1261 LHXXPXPPPP 1290
H PPPP
Sbjct: 629 NHSVLPPPPP 638
Score = 29.1 bits (62), Expect = 8.9
Identities = 22/84 (26%), Positives = 26/84 (30%)
Frame = +1
Query: 1042 PXXPSPXXXXXXXPPXXXPSPSSTXXLSVXXXPXXXPPXASXXLLFPQXXLPPPXXRXXA 1221
P P PP P P + P PP L P PPP
Sbjct: 554 PSGNKPAFSPPPPPPPPPPPPLPQSNYASSQPPPPPPPPPLPNCLVPSPPPPPP------ 607
Query: 1222 XXPXLTFXISRRPLHXXPXPPPPL 1293
P + + R + P PPPPL
Sbjct: 608 -PPPI---LPNRSVPPPPPPPPPL 627
>08_02_0672 - 19904353-19904839,19905646-19905704,19906137-19906352,
19906845-19907422,19907506-19908180,19908263-19908653,
19909469-19909621,19909727-19909980,19911023-19911479
Length = 1089
Score = 33.9 bits (74), Expect = 0.31
Identities = 24/85 (28%), Positives = 30/85 (35%)
Frame = +1
Query: 1036 LXPXXPSPXXXXXXXPPXXXPSPSSTXXLSVXXXPXXXPPXASXXLLFPQXXLPPPXXRX 1215
L P +P PP P+ ++ + P P S L P PP
Sbjct: 11 LDPPPATPPTAAAGTPPLAVPATNTPPNPATTPTPLTPNPNPSPTLPPPPMSTPP----- 65
Query: 1216 XAXXPXLTFXISRRPLHXXPXPPPP 1290
P +F S RPL P PPPP
Sbjct: 66 VVAPPMHSFAPSFRPLGAPPPPPPP 90
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 32.7 bits (71), Expect = 0.72
Identities = 28/95 (29%), Positives = 30/95 (31%)
Frame = +1
Query: 1006 PILFIXSFXXLXPXXPSPXXXXXXXPPXXXPSPSSTXXLSVXXXPXXXPPXASXXLLFPQ 1185
PI F+ P P P PP P P S P PP FP
Sbjct: 246 PIPFLTPPSPPPPAFPFPLPPWPWAPPPAFPFPHLPPIFS----PPSPPPPPPPAFPFPF 301
Query: 1186 XXLPPPXXRXXAXXPXLTFXISRRPLHXXPXPPPP 1290
LPP P +F S P P PPPP
Sbjct: 302 PQLPP----LPHFPPLPSFYPSPPPPPPPPPPPPP 332
>12_02_1174 - 26696869-26698191
Length = 440
Score = 30.3 bits (65), Expect = 3.9
Identities = 21/80 (26%), Positives = 25/80 (31%)
Frame = +1
Query: 1051 PSPXXXXXXXPPXXXPSPSSTXXLSVXXXPXXXPPXASXXLLFPQXXLPPPXXRXXAXXP 1230
P P PP P P P PP + L P PPP R + P
Sbjct: 148 PPPSLPPPPPPPPPPPPPRPPSVKPPVVQPKPQPPPS----LQPPSPPPPPPTRPPSVKP 203
Query: 1231 XLTFXISRRPLHXXPXPPPP 1290
+ + P P PPP
Sbjct: 204 PVVQPKPQPPPTLPPPSPPP 223
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 30.3 bits (65), Expect = 3.9
Identities = 21/81 (25%), Positives = 23/81 (28%)
Frame = +1
Query: 1051 PSPXXXXXXXPPXXXPSPSSTXXLSVXXXPXXXPPXASXXLLFPQXXLPPPXXRXXAXXP 1230
P P PP SP L P PP P PPP P
Sbjct: 1137 PPPPPLPEGPPPLPSDSPPCQPPLPPSPPPATPPPPPPLSPSLPPPPPPPPLPSGPPPQP 1196
Query: 1231 XLTFXISRRPLHXXPXPPPPL 1293
P+ P PPPP+
Sbjct: 1197 ----APPPLPIQPPPIPPPPV 1213
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,739,256
Number of Sequences: 37544
Number of extensions: 175878
Number of successful extensions: 531
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4490015796
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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