Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_G17
         (892 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1008 - 7987936-7988628,7988923-7989102                           36   0.043
08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165     31   1.6  
07_01_1201 - 11419851-11419913,11420090-11420311                       30   2.1  
12_02_1188 + 26801833-26802225                                         30   2.8  
03_06_0149 - 31987183-31987630,31987813-31987874                       30   2.8  
12_01_0816 + 7502669-7503145                                           29   5.0  
12_02_1052 - 25698263-25698394,25698587-25698679,25698945-256989...    29   6.6  
09_04_0424 + 17444261-17444665,17445974-17446367,17447367-174474...    29   6.6  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.7  

>01_01_1008 - 7987936-7988628,7988923-7989102
          Length = 290

 Score = 35.9 bits (79), Expect = 0.043
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = -1

Query: 610 RKRHASRREKGGQVSGKRQGRNRRAHEGAXQGETPG 503
           R R   RR  GG+V+G+   R+RR   GA +GE  G
Sbjct: 239 RVRRRGRRGGGGEVNGEEAARSRRRRRGAWEGEEEG 274


>08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165
          Length = 430

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = -2

Query: 531 RELXRGKRLVSL*SCRVSPPLT*ASIFVMLVQGGGAYGKTPAT 403
           R L RGK L+S  + R  PP   + + V+ + GGG  G  P T
Sbjct: 22  RVLSRGKSLLSPSTPRSPPPSYGSIVTVLSIDGGGVRGIIPGT 64


>07_01_1201 - 11419851-11419913,11420090-11420311
          Length = 94

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +1

Query: 469 QRWRN--PTGL*RYQAFPPGKLPRALSCSDPAAYRIP 573
           Q+WR+  PTG   + +FP G LP A     PA  R P
Sbjct: 27  QQWRSTGPTGKLCFCSFPAGALPPAAGAGQPAPDRQP 63


>12_02_1188 + 26801833-26802225
          Length = 130

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 580 GGQVSGKRQGRNRRAHEGAXQGETPGIFIVLSG 482
           GG  SGKR      AHEG  +G  P +++V  G
Sbjct: 33  GGGSSGKRSSSAAAAHEGVPEGHVP-VYVVGEG 64


>03_06_0149 - 31987183-31987630,31987813-31987874
          Length = 169

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 616 AMRKRHASRREKGGQVSGKRQGRNRRAHEGAXQGETP 506
           A+ + H   R +   +  +R+GR R AHEG   G  P
Sbjct: 76  AVARGHGLERLQEAGIEAERRGRRRNAHEGIKIGAEP 112


>12_01_0816 + 7502669-7503145
          Length = 158

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -3

Query: 707 RRSGRAERGVRAHSPAWSERPTPN*DTYSVSYEKAPRFPKGERR 576
           R SG  +R V    PAW ER   + ++ +V  E+A      ERR
Sbjct: 8   RSSGEGDRPVARWWPAWQEREKESLESSAVEGERATAEVGSERR 51


>12_02_1052 -
           25698263-25698394,25698587-25698679,25698945-25698995,
           25699074-25699258,25699361-25699407,25699704-25699918
          Length = 240

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = -3

Query: 749 SCLTGWTQDD--SYRIRRSGRAERGVRAHSPAWSERPTPN*DTYSVSYEKA-PRFPK 588
           +C T  T     S R  R+  + R  R  S  W+ RP+    T S+S  +  PRFP+
Sbjct: 40  ACCTAATSSTRRSRRPMRASASSRRRRTPSSTWTPRPSRYGGTPSISTSRGQPRFPR 96


>09_04_0424 +
           17444261-17444665,17445974-17446367,17447367-17447425,
           17447507-17447637,17447737-17447833,17447936-17448100
          Length = 416

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +3

Query: 651 FAPSWAVCTNPPFSPTAAPYPVTIVLSPP 737
           F P  AV   PP  P AAP PV + +  P
Sbjct: 67  FVPFHAVGPPPPPQPRAAPPPVAVAMGSP 95


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +3

Query: 186 NESAN---ARGEAVCVLGALPLPRSLTRCAR 269
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,255,080
Number of Sequences: 37544
Number of extensions: 542592
Number of successful extensions: 1835
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1832
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)