Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_G16
         (884 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    28   1.5  
SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c...    27   2.7  
SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces po...    27   2.7  
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    27   4.7  
SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe...    27   4.7  
SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch...    26   6.2  
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch...    26   8.2  

>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
 Frame = +1

Query: 553 NWKHLPVG-----YHGRSSSIVISGTPIHRPYGQTLPVEGAAPHFGPCRLMDFELE 705
           NW HLP       Y  R S+  I     ++    +LP EG      P R+M F++E
Sbjct: 248 NWIHLPASKYQFRYQNRVSNCQIEAWINYKDL-ISLPAEGQWSKMAPLRIMSFDIE 302


>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 489

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +3

Query: 471 LHRLLFVAAARYQRRHNVQGKGGRSVRELETSTGGLSWTFQFYSDLWHTYPQALWT 638
           L  L+  A A  +R   + G   ++V  + T +G L W    + DL  T P   WT
Sbjct: 291 LFTLILDAKALKRRTRGIIGLTIQAVVIMATLSGELGWIVSKHIDLHDTSPDLDWT 346


>SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 367

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = +1

Query: 187 QKHIGVAIGEWILDLNIISHLFDGPLLKGKQNVFKEEKLNAFMALTKPHWIEARE--TLQ 360
           QKH  + + EW+    I +   +G  + GK+   KEE L++     K +  E ++  TL+
Sbjct: 307 QKHFNLTVKEWVF---IANAAINGSWISGKR---KEELLSSVQKCVKEYTAEIQQPKTLE 360

Query: 361 KLLDVSS 381
             ++V +
Sbjct: 361 TAVEVQA 367


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = -1

Query: 218 HSPIATPMCF--WAFLSDVNTP-YGKFSIGKSESDEYSMKDFILRYDLTQAKFFE*KKIK 48
           H P  TP  +  W F S  +     K S   SE+DE +MK+ I + + TQ K       +
Sbjct: 752 HHPDKTPSEYIQWRFQSGEDLEAMDKASRVISEADEEAMKNKIFKIEGTQRKILGIHSRR 811

Query: 47  ILRNS 33
            L+NS
Sbjct: 812 KLKNS 816


>SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 548

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 576 LSWTFQFYSDLWHTYPQALWTDLACRRCGAPL 671
           L  TF F+SDL+  +P   W   A R    PL
Sbjct: 229 LDCTFSFFSDLFSRFPVQSWYSEAIRANLQPL 260


>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 538

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +3

Query: 201 RGYRRMDFRFEYYFTFIRWPAT*RQAKCIQGREIKRVYGTDQTSLDRGK 347
           +G      R++    F RW A   +   I+   I +VY  DQ ++ +G+
Sbjct: 127 QGGELCSLRYDLTVPFARWLAMNPKVTSIKRFHIAKVYRRDQPAMTKGR 175


>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 463

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 182 FLSDVNTPYGKFSIGKSESDEYSMK 108
           F SD N+    FS+G++ S  YS+K
Sbjct: 101 FKSDTNSTSSGFSVGEAISSGYSLK 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,949,985
Number of Sequences: 5004
Number of extensions: 92571
Number of successful extensions: 272
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)