Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_G16
(884 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0724 - 5415218-5415280,5415398-5415523,5415614-5415710,541... 215 3e-56
05_05_0005 + 21442819-21442916,21443053-21443119,21443226-214432... 29 5.0
06_01_0263 + 1936927-1936936,1937031-1937305,1937727-1938079,193... 29 6.6
01_06_0529 - 30026101-30026277,30026363-30026438,30026509-300265... 29 6.6
06_03_0970 + 26424209-26424910,26425053-26425109,26425251-264254... 28 8.7
04_04_0707 - 27435894-27436474,27437707-27438241 28 8.7
>02_01_0724 -
5415218-5415280,5415398-5415523,5415614-5415710,
5415797-5415861,5415964-5416026,5416127-5416197,
5416430-5416489,5416564-5416663,5416863-5416938,
5417284-5417358,5417451-5417575,5417664-5417722,
5418031-5418109,5418303-5418533
Length = 429
Score = 215 bits (526), Expect = 3e-56
Identities = 107/232 (46%), Positives = 148/232 (63%), Gaps = 5/232 (2%)
Frame = +1
Query: 100 MKSFIEYSSDSDFPIENLPYGVFT---SDKNAQKHIGVAIGEWILDLNIISH--LFDGPL 264
++SF+E + S FPI+NLP+GVF S + VAIG++ LDL +S LF GPL
Sbjct: 9 LRSFVEVAPGSHFPIQNLPFGVFRRRGSPEPEPPRPAVAIGDFALDLAAVSDAGLFHGPL 68
Query: 265 LKGKQNVFKEEKLNAFMALTKPHWIEARETLQKLLDVSSPALQNNAELREKAFVKQRDVQ 444
L F++E LN F+ + +P W EAR TLQK+L P L++N L++K V D +
Sbjct: 69 LSASP-CFRQETLNMFLGMGRPAWKEARATLQKILSADEPVLRDNEALKKKCLVPMSDTE 127
Query: 445 MHVPVEVGDYTDFYSSLQHATNVGIMFRGKEAALFENWKHLPVGYHGRSSSIVISGTPIH 624
M +P+ VGDYTDF+ S+ HA N G +FRG + + NW LPVGYHGR+SS+++SGT I
Sbjct: 128 MLLPITVGDYTDFFCSVHHARNCGFIFRGPQTPVNPNWFQLPVGYHGRASSVIVSGTDII 187
Query: 625 RPYGQTLPVEGAAPHFGPCRLMDFELEVGAFVGGPPTQLGERVCAKDAEDKI 780
RP GQ P + P+FGP + +DFELE+ A V GP +LG+ + DAE+ I
Sbjct: 188 RPKGQGHPTGDSRPYFGPSKKLDFELEMAAIV-GPGNELGKPIDINDAEEHI 238
Score = 40.3 bits (90), Expect = 0.002
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = +3
Query: 780 FGFVLLTDWSARDIQKWEYIPL 845
FG +++ DWSARDIQ WE IPL
Sbjct: 239 FGLMIMNDWSARDIQAWETIPL 260
>05_05_0005 + 21442819-21442916,21443053-21443119,21443226-21443291,
21443368-21443414,21443480-21443543,21443627-21443707,
21443781-21443823,21443912-21443961,21444262-21444343,
21445045-21445120,21445451-21445558,21445782-21445833,
21445911-21446570,21446652-21448067
Length = 969
Score = 29.1 bits (62), Expect = 5.0
Identities = 21/58 (36%), Positives = 28/58 (48%)
Frame = +1
Query: 259 PLLKGKQNVFKEEKLNAFMALTKPHWIEARETLQKLLDVSSPALQNNAELREKAFVKQ 432
P N KEE A AL + + E L+ LL++S+ L+NN L E A V Q
Sbjct: 880 PYTSEASNGVKEEASPAKEALDVTSFRQRAEALEGLLELSADLLENN-RLEELAIVLQ 936
>06_01_0263 +
1936927-1936936,1937031-1937305,1937727-1938079,
1938598-1938715,1938823-1938946,1939389-1939608,
1939948-1940017,1940083-1940136,1940536-1940604,
1941138-1941194,1941503-1941575,1942037-1942080,
1942629-1942751,1943092-1943321,1943552-1943660,
1944196-1944339,1944443-1944604,1944921-1945197,
1945326-1945486,1945591-1945782,1946789-1946971,
1946986-1947063,1947187-1947366,1947476-1947562
Length = 1130
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -3
Query: 507 GSVLQRRIEVCVISDFNRHVHLYVPLLHE 421
G VL RI + V+S + H+HL VPL E
Sbjct: 409 GVVLADRIHMLVLSMLDLHMHLEVPLRRE 437
>01_06_0529 -
30026101-30026277,30026363-30026438,30026509-30026570,
30026882-30027031,30027213-30027338,30028096-30028305,
30028870-30028938,30029024-30029080,30029131-30029277,
30029358-30029542,30029623-30029698,30029796-30029918,
30030395-30030410,30031743-30032745,30033521-30033789,
30034297-30034415
Length = 954
Score = 28.7 bits (61), Expect = 6.6
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
Frame = +1
Query: 241 SHLFDGPLLKGKQNVFKEEK--LNAFMALTKPHWIEARETLQKLLDVSSPALQNNAELRE 414
+HL + PL + V KEE L A K +E ET + L + +A +RE
Sbjct: 204 AHLCESPLFM-ELTVLKEENMLLKADAQFLKAKIVEFAETEEFLFKLEKERSLLDATVRE 262
Query: 415 ---KAFVKQRDVQMHVPVEVGDYTDFYSSLQH 501
+ V Q D+ VP++ + + +LQH
Sbjct: 263 LEARFLVAQTDIWKVVPLQYDVWMEKVENLQH 294
>06_03_0970 +
26424209-26424910,26425053-26425109,26425251-26425478,
26425788-26425881,26425955-26426161,26426581-26426711,
26426943-26426992,26427125-26427432,26427548-26427651,
26427810-26428526,26429159-26429338,26429703-26429831
Length = 968
Score = 28.3 bits (60), Expect = 8.7
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1
Query: 331 HWIEARETLQKLLDVSSPALQNNAELREKAFVKQRDVQMHVPVE 462
+W E L+K L+ S LQ L EK +++Q H PVE
Sbjct: 167 YWKERAMQLEKTLEAS---LQRERSLEEKLEENIKNLQSHTPVE 207
>04_04_0707 - 27435894-27436474,27437707-27438241
Length = 371
Score = 28.3 bits (60), Expect = 8.7
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 169 TSDKNAQK-HIGVAIGEWILDLNIISHLFDGPLLKGKQNVFKEEKLNAFMAL 321
+S NA+ H+ + + +L+ I S F L+K +N KE+ LNAF L
Sbjct: 294 SSSPNARDIHLPSSFKDLVLERKI-SDAFSSELVKQSKNSGKEQNLNAFFEL 344
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,135,304
Number of Sequences: 37544
Number of extensions: 643731
Number of successful extensions: 1776
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1774
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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