Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_G16
         (884 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39852-6|AAK39259.1|  418|Caenorhabditis elegans Hypothetical pr...   295   3e-80
U97403-6|AAB52471.2|  583|Caenorhabditis elegans Hypothetical pr...    33   0.36 
AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical ...    31   1.1  
AF016668-6|AAB66090.1|  275|Caenorhabditis elegans Hypothetical ...    30   1.9  
Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical pr...    29   5.8  
U23523-3|AAC46558.2|  152|Caenorhabditis elegans Hypothetical pr...    29   5.8  
U00066-1|AAA50742.1|  490|Caenorhabditis elegans High incidence ...    29   5.8  
AF003385-2|AAB54249.1|  773|Caenorhabditis elegans Hypothetical ...    28   7.7  

>U39852-6|AAK39259.1|  418|Caenorhabditis elegans Hypothetical
           protein K10C2.4 protein.
          Length = 418

 Score =  295 bits (724), Expect = 3e-80
 Identities = 136/227 (59%), Positives = 170/227 (74%)
 Frame = +1

Query: 100 MKSFIEYSSDSDFPIENLPYGVFTSDKNAQKHIGVAIGEWILDLNIISHLFDGPLLKGKQ 279
           MKSF+    +SDFPI+NLPYGVF++  ++ +HIGVAIG+ IL+L  I++LFDGP LK  Q
Sbjct: 1   MKSFVSVPQNSDFPIQNLPYGVFSTKADSSRHIGVAIGDQILNLAEIANLFDGPQLKAHQ 60

Query: 280 NVFKEEKLNAFMALTKPHWIEARETLQKLLDVSSPALQNNAELREKAFVKQRDVQMHVPV 459
           +VFK+  LNAFMAL +P W+EAR  +Q+LL      L++NA LR +A V Q D  MH+P 
Sbjct: 61  DVFKQSTLNAFMALPRPAWLEARARIQQLLSEDCAVLRDNAHLRSRALVAQSDATMHLPA 120

Query: 460 EVGDYTDFYSSLQHATNVGIMFRGKEAALFENWKHLPVGYHGRSSSIVISGTPIHRPYGQ 639
           ++GDYTDFYSS+ HATNVGIMFRGKE AL  NWK LPVGYHGR+SSIV+SGT + RP GQ
Sbjct: 121 QIGDYTDFYSSIHHATNVGIMFRGKENALMPNWKWLPVGYHGRASSIVVSGTDLKRPVGQ 180

Query: 640 TLPVEGAAPHFGPCRLMDFELEVGAFVGGPPTQLGERVCAKDAEDKI 780
           T   +   P FGP +LMDFELE+  FVGGP  +LG RV  + AED+I
Sbjct: 181 TKAPDAEVPSFGPSKLMDFELEMAFFVGGPENELGTRVPIEKAEDRI 227



 Score = 45.2 bits (102), Expect = 6e-05
 Identities = 17/22 (77%), Positives = 19/22 (86%)
 Frame = +3

Query: 780 FGFVLLTDWSARDIQKWEYIPL 845
           FG VL+ DWSARDIQ WEY+PL
Sbjct: 228 FGVVLMNDWSARDIQAWEYVPL 249


>U97403-6|AAB52471.2|  583|Caenorhabditis elegans Hypothetical
           protein T10E9.3 protein.
          Length = 583

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 4/136 (2%)
 Frame = +1

Query: 79  CVKS*RKMKSFIEYSSDSDFPIENLPYGVFTSDKNAQKHIGVAIGEWILDLNIISHLFDG 258
           C       K+ IE+  D D     + + VF + K  +    + +GE + DLN+I    + 
Sbjct: 198 CSTGGEDQKNRIEWKVDGDL----IYFSVFQNAKKGRWWTAIGVGESMNDLNMILLFAEN 253

Query: 259 PLLKGKQNVFKEEKLNAFMALTKPHWIEARETLQKLLDVSSPALQNNAELREKAFVKQRD 438
             LK KQ +FK E       L   +  E  E  + L  V++     +  + +K F+ + D
Sbjct: 254 GRLK-KQGIFKTE--GKMQPLEVEY--EGIEVKKDLAIVNNGKANFDVSVEKKFFLDRAD 308

Query: 439 VQ----MHVPVEVGDY 474
            Q    M V +  G Y
Sbjct: 309 EQGCFTMQVAILAGQY 324


>AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical
           protein Y80D3A.8 protein.
          Length = 1293

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
 Frame = +1

Query: 349 ETLQKLLDVSSPALQNNA-ELREKAFVKQRDVQMHVPVEVGDYTDFYSSLQHATNVGIMF 525
           E ++KL +V   A  NN     EK  ++  D ++     +GD T+   S+++   VG   
Sbjct: 117 ELIKKLKEVRQSAAANNEISPMEKRALEWEDYRLRSEF-IGDVTNLTGSVEYFNAVGNFQ 175

Query: 526 RGKEAALFENWKHLPVGYHGRSSSIVIS 609
           R   ++LFE+      G++   +SI+ S
Sbjct: 176 RDFNSSLFESTAEKFDGFNEHITSILKS 203


>AF016668-6|AAB66090.1|  275|Caenorhabditis elegans Hypothetical
           protein F36H9.2 protein.
          Length = 275

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
 Frame = -1

Query: 455 GTCICTSLCFTKAFSRSSALFCNAGLETSSNFCKVSLASIQ*GLVSAINAFNFSSLNTFC 276
           G C  TS C T   S +  +     L T ++       + + GLVS + + +  +++TF 
Sbjct: 32  GFCETTSYCMTSWVSINGQITAQDCLTTRTDLSDRQCQTNRKGLVSCVCSTDMCNVDTFS 91

Query: 275 LP----LSSGPSNKC 243
           +P    L++ P+ KC
Sbjct: 92  IPTDIVLTAPPTIKC 106


>Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical
           protein T07D4.4a protein.
          Length = 1022

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = -1

Query: 815 TCTPVGQKHETKILSSASLAQTLSPSCVGGPPTNAPTSSSKSISLQGPKWGAAPSTG 645
           T    G K   + +SS S A + S SC    PT+  TS+  S   Q   + + PS G
Sbjct: 282 TVASFGSKPSNENISSNSSALSSSSSCFAAKPTS--TSAGGSFGNQPSSFSSKPSFG 336


>U23523-3|AAC46558.2|  152|Caenorhabditis elegans Hypothetical
           protein F53A9.3 protein.
          Length = 152

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +1

Query: 523 FRGKEAALFENWKHLPVGYHGRSSSIVISGTPIHRPYGQTLPVEGAAPHF 672
           FR +E  ++  WK +   Y+ +S    IS   + R     L VEG  PHF
Sbjct: 15  FRDEEKGIYAQWK-IKGFYYRKSGLPKISIKGVARVRYSQLEVEGKLPHF 63


>U00066-1|AAA50742.1|  490|Caenorhabditis elegans High incidence of
           males (increasedx chromosome loss) protein 10 protein.
          Length = 490

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +1

Query: 265 LKGKQNVFKEEKLNAFMALTKPH-WIEARETLQKLLDVSSPALQNNAELREKAFVKQRDV 441
           L+ ++     EK N  + + K H W E RE +  L+DV S  L+   E+ E+     +++
Sbjct: 278 LEAREICINSEK-NVPVIIEKIHQWTEVREVIIDLIDVESENLRKLKEMEEQLDFMMKEM 336

Query: 442 Q 444
           +
Sbjct: 337 E 337


>AF003385-2|AAB54249.1|  773|Caenorhabditis elegans Hypothetical
           protein R08F11.7 protein.
          Length = 773

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 20/75 (26%), Positives = 32/75 (42%)
 Frame = +1

Query: 586 RSSSIVISGTPIHRPYGQTLPVEGAAPHFGPCRLMDFELEVGAFVGGPPTQLGERVCAKD 765
           R++S+  S  P  R     L  EG+ P+F P  +    +++G F+      +     AKD
Sbjct: 245 RNTSVTGSPLPSTRLISNKLHDEGSTPNFSP-SVNHLHMQIGQFIAHDIIFMPSST-AKD 302

Query: 766 AEDKILVSCF*PTGV 810
                  SC  PT +
Sbjct: 303 GSSLNCTSCSSPTTI 317


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,143,611
Number of Sequences: 27780
Number of extensions: 543469
Number of successful extensions: 1537
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1537
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)