Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_G16
         (884 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    30   0.033
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    28   0.13 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.6  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   4.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   8.6  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 29.9 bits (64), Expect = 0.033
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = -1

Query: 848 PKRYVLPLLDVTCTPVGQKHETKILSSASLAQTLSPSCVGGPPTNAP 708
           P+  +LP++ V C PV Q +++ ILS   + + LS S    PP   P
Sbjct: 783 PRIPILPMIPVYCVPVPQVNDSTILS--PVREKLSSSQPMQPPQQNP 827


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 27.9 bits (59), Expect = 0.13
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 469 LRLQQARAFVRPFASRRPFHVARHCFATQ 383
           +RL  ARAF+ PF +R   HV  +   T+
Sbjct: 261 VRLSSARAFITPFENRSNLHVIVNATVTK 289


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -1

Query: 257 PSNKCEIIFKSKIHSPIATPMCFWAFLSDVNTPYGKFSIGKSESDE 120
           PSN+  I   +       T +CF++ L D  T  G++ +   E  E
Sbjct: 372 PSNEETIDINNGAELMQETHVCFFSLLRDAFTSKGEYRMSTGEMKE 417


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -1

Query: 710 PTSSSKSISLQGPKWG 663
           P+SS+KS  L+GP+ G
Sbjct: 199 PSSSTKSYVLEGPRNG 214


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/25 (28%), Positives = 12/25 (48%)
 Frame = +2

Query: 434 GTYKCTCLLKSEITQTSIRRCSTLP 508
           G Y C  +   ++ QT +    T+P
Sbjct: 378 GNYTCHAVRNQDVVQTHVLTIHTIP 402


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 263,211
Number of Sequences: 438
Number of extensions: 6854
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)