Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_G15
(899 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1201 - 11419851-11419913,11420090-11420311 35 0.10
04_03_0380 - 15150814-15152304 33 0.31
04_03_0348 + 14735581-14737071 33 0.31
10_01_0038 + 437738-438122,439215-439501,440111-440375,440687-44... 31 1.6
03_05_0019 + 19862171-19863049 30 2.2
03_02_0992 + 13049871-13050449 30 2.2
12_01_0349 + 2677347-2677424,2677548-2677631,2677717-2677821,267... 29 3.8
04_03_0934 - 20912932-20912997,20913131-20913172,20913477-209138... 29 5.0
06_01_0438 + 3110703-3111945,3112486-3113057 29 6.7
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343 29 6.7
03_01_0051 + 445035-445303,445380-445590,445737-445930,446151-44... 29 6.7
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 8.8
07_01_0857 - 7127681-7127830,7128896-7129414 28 8.8
01_05_0333 + 21064693-21066006 28 8.8
>07_01_1201 - 11419851-11419913,11420090-11420311
Length = 94
Score = 34.7 bits (76), Expect = 0.10
Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = +1
Query: 547 LRPPDEHHKNRRSSQRWRN--PTGL*RYQAFPPGKLPRALSCSDPAAYRXTCPPFSPS 714
L PP Q+WR+ PTG + +FP G LP A PA R P PS
Sbjct: 13 LLPPPPPLPALPQGQQWRSTGPTGKLCFCSFPAGALPPAAGAGQPAPDRQPATPLFPS 70
>04_03_0380 - 15150814-15152304
Length = 496
Score = 33.1 bits (72), Expect = 0.31
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = -1
Query: 713 EGEKGGQVXR*AAGSEQESARGSFPGGNA 627
EGEKG ++ R AAG ++ +AR + PGG A
Sbjct: 444 EGEKGAEMRRRAAGWKEAAARAARPGGPA 472
>04_03_0348 + 14735581-14737071
Length = 496
Score = 33.1 bits (72), Expect = 0.31
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = -1
Query: 713 EGEKGGQVXR*AAGSEQESARGSFPGGNA 627
EGEKG ++ R AAG ++ +AR + PGG A
Sbjct: 444 EGEKGAEMRRRAAGWKEAAARAARPGGPA 472
>10_01_0038 +
437738-438122,439215-439501,440111-440375,440687-440784
Length = 344
Score = 30.7 bits (66), Expect = 1.6
Identities = 28/88 (31%), Positives = 36/88 (40%)
Frame = -2
Query: 661 RAHEGAFQGETPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTPATRPFYGSWPFAGLLL 482
R H+ F G G L G + LS R GGG P+TR G G +
Sbjct: 213 RGHDTVFDGVYVGRRWRLGGGSDGVLSSARSGGRGGGGDDSALPSTRS-GGKGDSGGSVA 271
Query: 481 TCSFLRYPLILWITVLPPLSELIPLAAA 398
T S R + + PPLS LI +A +
Sbjct: 272 TASPHRLQMAGNPRLSPPLSPLISIAGS 299
>03_05_0019 + 19862171-19863049
Length = 292
Score = 30.3 bits (65), Expect = 2.2
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 3/94 (3%)
Frame = +1
Query: 550 RPPDEHHKNRRSSQRWRNPTGL*RYQAFPPGKLPRALSCSDPAAYRXTCPPFSPSGSVAL 729
RPP+ K ++QR + P + Q P K P+ + PA + P P V
Sbjct: 175 RPPEPPPK---TTQRQQPPGPPPKPQPSAP-KRPQVVQMRRPAPAKQQRPTILPPPPVVK 230
Query: 730 SHS---SRCRYLSSGVGRSLQAGLCARTPRSARP 822
S +C+Y + + +S + C R+P +P
Sbjct: 231 RPSPTRGKCQYCGAAISKSFRCMSCHRSPMDNKP 264
>03_02_0992 + 13049871-13050449
Length = 192
Score = 30.3 bits (65), Expect = 2.2
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = +1
Query: 625 QAFPPGKLPRALSCSDPAAYRXTCPPFSPSGS-VALSHSSR-CRYLSSGVGRSLQAGLCA 798
++ PP L R ++ + P + T P P+GS SSR CR+L R + +CA
Sbjct: 85 RSVPPPSLGRGVASTSPPLHAATVTPLRPAGSRSGEGGSSRHCRFLH----RRHRRRVCA 140
Query: 799 RTPRSARPVR 828
T P R
Sbjct: 141 TTVAPPHPAR 150
>12_01_0349 +
2677347-2677424,2677548-2677631,2677717-2677821,
2678217-2678363,2678987-2679244,2679337-2679468,
2679550-2679570
Length = 274
Score = 29.5 bits (63), Expect = 3.8
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +2
Query: 587 VRGGETRQDYKDTRRFPLESS-LVRSPVPTLPLTGIPVR-LSPLREAWRFLIAH 742
VR Y +++ L SS ++R P P LP T ++ L +RE +F++ H
Sbjct: 15 VRVAALGHGYTESQLAALMSSFIIRKPPPKLPFTKAAIKTLESIRELEKFIVKH 68
>04_03_0934 -
20912932-20912997,20913131-20913172,20913477-20913845,
20913949-20914080
Length = 202
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -1
Query: 719 LPEGEKGGQVXR*AAGSEQESARGSFPGGNA 627
LP + GG SE+ S RG+ PGGNA
Sbjct: 84 LPGSDDGGGGDMPTLPSERRSPRGALPGGNA 114
>06_01_0438 + 3110703-3111945,3112486-3113057
Length = 604
Score = 28.7 bits (61), Expect = 6.7
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -3
Query: 162 HCILVVVCPNSSMYLIMSGSN*PSXKGRSAAAVP 61
HC + +VC +S+ L++S P+ ++AA+P
Sbjct: 64 HCFVEIVCADSAGRLLLSAKPRPAPAATTSAALP 97
>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
Length = 356
Score = 28.7 bits (61), Expect = 6.7
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +2
Query: 359 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 514
P PRS RC GCG R Q TQR P N IT E TC ++ P +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203
>03_01_0051 +
445035-445303,445380-445590,445737-445930,446151-446228,
447049-447141,448495-448525,448729-449058
Length = 401
Score = 28.7 bits (61), Expect = 6.7
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Frame = +1
Query: 640 GKLPRALSCSDPAAYRXTCPPFSPSGSVALSHS-----SRCRYLSSGVGRSLQAGLCART 804
G+ P A+S S P YR + P FSPS + S + S CR + G+ + C
Sbjct: 291 GQAP-AMSAS-PEFYRPSPPAFSPSCAAGTSTTEVDEYSCCRTPTPGI---REPATCPPA 345
Query: 805 PRSARPV 825
PR RPV
Sbjct: 346 PRKPRPV 352
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +2
Query: 308 NESAN---ARGEAVCVLGALPLPRSLTRCAR 391
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>07_01_0857 - 7127681-7127830,7128896-7129414
Length = 222
Score = 28.3 bits (60), Expect = 8.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 662 PVPTLPLTGIPVRLSPLREAWRFLIAH 742
P+P +P G+ V L P R WR+ H
Sbjct: 92 PLPAVPSPGVAVHLRPRRWDWRWRRCH 118
>01_05_0333 + 21064693-21066006
Length = 437
Score = 28.3 bits (60), Expect = 8.8
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -3
Query: 729 KRHASRRGERRTGXPVSGRVGTGERTRELSRGKRLVSL*SCRVSPP 592
+ A +RR G PV+ + TG+ R R RL S +V PP
Sbjct: 393 RERAPLHQQRRAGRPVNSQRPTGDMVRSSGRASRLAS----QVRPP 434
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,923,395
Number of Sequences: 37544
Number of extensions: 534550
Number of successful extensions: 1576
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1575
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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