Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_G14
(853 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 116 4e-27
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 57 3e-09
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 50 3e-07
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 50 4e-07
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 48 2e-06
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 45 2e-05
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 44 4e-05
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 42 8e-05
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 42 1e-04
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 42 1e-04
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 42 1e-04
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 42 1e-04
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 42 1e-04
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 41 3e-04
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 40 3e-04
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 39 0.001
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 38 0.002
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 38 0.002
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 37 0.004
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 37 0.004
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 33 0.039
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 33 0.039
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 33 0.068
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 32 0.090
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 32 0.12
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 32 0.12
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 28 1.9
SPBC146.10 |mug57||meiotically upregulated gene Mug57|Schizosacc... 27 2.6
SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces po... 26 5.9
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 7.8
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom... 26 7.8
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 26 7.8
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 26 7.8
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 116 bits (279), Expect = 4e-27
Identities = 49/87 (56%), Positives = 67/87 (77%)
Frame = +2
Query: 329 MTNVKNVLKLSERELGSSSKTSWHDQYKDSAWIFVGGLPYDLTEGDVICVFSQYGEIVNI 508
M +++ + +L+E+EL +SWH Y DSA+I++G L +DL E D++CVFS++GE V+I
Sbjct: 1 MNSIRQIERLNEQELDKPFSSSWHQDYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDI 60
Query: 509 NMVRDKTTGKPKGFAFLCYEDQRSTTL 589
N+VRDK TGK KGFAFL YEDQRST L
Sbjct: 61 NLVRDKETGKSKGFAFLKYEDQRSTVL 87
Score = 39.9 bits (89), Expect = 4e-04
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +3
Query: 525 KQPGNQKDLHFCAMRIKDQQL*XVDNLNGIKILGRTLRVDHCEQYKVPNAD 677
K+ G K F + + VDN+ +K+L R +RVDH YKVP +
Sbjct: 66 KETGKSKGFAFLKYEDQRSTVLAVDNMTNVKLLDRLVRVDHVASYKVPQKE 116
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 57.2 bits (132), Expect = 3e-09
Identities = 22/58 (37%), Positives = 41/58 (70%)
Frame = +2
Query: 401 DQYKDSAWIFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAFLCYEDQ 574
++ + +A +FVGG+P D TE + F+Q+G +++ ++ DK TG+P+GF F+ YE++
Sbjct: 241 EEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENE 298
Score = 50.8 bits (116), Expect = 2e-07
Identities = 18/56 (32%), Positives = 38/56 (67%)
Frame = +2
Query: 410 KDSAWIFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAFLCYEDQR 577
++ +F+GGL ++ T+ + F Q+GE+++ ++RD TTG+ +GF FL +++ +
Sbjct: 160 REDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPK 215
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 50.4 bits (115), Expect = 3e-07
Identities = 25/59 (42%), Positives = 36/59 (61%)
Frame = +2
Query: 401 DQYKDSAWIFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAFLCYEDQR 577
D YK +F+ L YD E D+ F++YG I I +VR+K TGK G+AF+ +E +R
Sbjct: 97 DPYKT---MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERER 152
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 50.0 bits (114), Expect = 4e-07
Identities = 20/52 (38%), Positives = 32/52 (61%)
Frame = +2
Query: 416 SAWIFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAFLCYED 571
S ++VG +PY++ E VI +F Q G + + +V D +G+PKG+ F Y D
Sbjct: 4 SCVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHD 55
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 47.6 bits (108), Expect = 2e-06
Identities = 19/55 (34%), Positives = 32/55 (58%)
Frame = +2
Query: 425 IFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAFLCYEDQRSTTL 589
+FVG +PYD++E + +F+Q G + +V D TG KG+ F + D +T +
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAM 63
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 44.8 bits (101), Expect = 2e-05
Identities = 27/72 (37%), Positives = 39/72 (54%)
Frame = +2
Query: 359 SERELGSSSKTSWHDQYKDSAWIFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGK 538
S RE G S D DSA + V L D E ++ +F ++G I + + +DK TG+
Sbjct: 185 SGRESGDSMFKRERD---DSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGR 241
Query: 539 PKGFAFLCYEDQ 574
KGFAF+ Y D+
Sbjct: 242 AKGFAFVSYYDR 253
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 43.6 bits (98), Expect = 4e-05
Identities = 17/49 (34%), Positives = 29/49 (59%)
Frame = +2
Query: 425 IFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAFLCYED 571
+F+ L Y E D+ +F +G++ ++M DK T PKGFA++ + D
Sbjct: 325 LFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHD 373
Score = 32.3 bits (70), Expect = 0.090
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +2
Query: 350 LKLSERELGSSSKTSWHDQYKDSAW-IFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDK 526
+KLS + + ++++ D K I + LP++ T+ DV + YG++ ++ V K
Sbjct: 697 IKLSHQGVDAAAEVRKQDSSKPKGTKILIKNLPFEATKKDVQSLLGAYGQLRSVR-VPKK 755
Query: 527 TTGKPKGFAF 556
+GFAF
Sbjct: 756 FDRSARGFAF 765
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 42.3 bits (95), Expect = 8e-05
Identities = 19/75 (25%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Frame = +2
Query: 350 LKLSERELGSSSKTSWHDQYK-DSAWIFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDK 526
L+ + +L + ++ +D+ D+ ++VG + Y +T ++ F+ G + + ++ DK
Sbjct: 31 LRAMQEQLDNETEALRNDKESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDK 90
Query: 527 TTGKPKGFAFLCYED 571
TG PKGFA++ + +
Sbjct: 91 FTGHPKGFAYIEFSE 105
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 41.9 bits (94), Expect = 1e-04
Identities = 19/52 (36%), Positives = 32/52 (61%)
Frame = +2
Query: 416 SAWIFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAFLCYED 571
S+ +FVG L ++ T+ D+ F Q G+I + ++ + TGK KGF F+ + D
Sbjct: 227 SSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPD 278
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 41.9 bits (94), Expect = 1e-04
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +2
Query: 401 DQYKD-SAWIFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAFLCYED 571
DQ + S +FVG L ++ TE D+ F G+I +I + D +G+ KGF ++ + D
Sbjct: 359 DQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSD 416
Score = 34.7 bits (76), Expect = 0.017
Identities = 14/52 (26%), Positives = 31/52 (59%)
Frame = +2
Query: 413 DSAWIFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAFLCYE 568
++ +FVG L +++ + + F +YG IV ++ D +G+ KG+ ++ +E
Sbjct: 261 ETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFE 312
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 41.9 bits (94), Expect = 1e-04
Identities = 18/53 (33%), Positives = 31/53 (58%)
Frame = +2
Query: 410 KDSAWIFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAFLCYE 568
K ++VG LP+ E + FSQ+G ++ + M R++ TG K +AF+ +E
Sbjct: 102 KKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFE 154
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 41.5 bits (93), Expect = 1e-04
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Frame = +2
Query: 380 SSKTSWHDQYKDSAWIFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAFL 559
SSK S ++ +D +FV L LT ++ F Q G + + +VRDK +G+ KG A++
Sbjct: 229 SSKLS--EEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYV 286
Query: 560 --CYED 571
C+ED
Sbjct: 287 EFCHED 292
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 41.5 bits (93), Expect = 1e-04
Identities = 22/55 (40%), Positives = 30/55 (54%)
Frame = +2
Query: 401 DQYKDSAWIFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAFLCY 565
D K S ++VG L + TE + +FS+ GEI I M D+ T P GF F+ Y
Sbjct: 26 DAVKQSNCVYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEY 80
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 40.7 bits (91), Expect = 3e-04
Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 4/119 (3%)
Frame = +2
Query: 221 VNCDVYLDDFSNIYGY-FKQF*LVNREP*VKPVIMNPMTNVKNVL---KLSERELGSSSK 388
++C V +D+ N GY F F V + + N K V +S RE S +
Sbjct: 195 LSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVE 254
Query: 389 TSWHDQYKDSAWIFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAFLCY 565
+ +++ L ++TE + +F Q+GEI ++++V+D+ KP+GF F+ Y
Sbjct: 255 AL----KANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQ-NDKPRGFGFVNY 308
Score = 33.5 bits (73), Expect = 0.039
Identities = 15/52 (28%), Positives = 30/52 (57%)
Frame = +2
Query: 416 SAWIFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAFLCYED 571
SA ++VG L +TE + +F+ G + +I + RD T + G+A++ + +
Sbjct: 79 SASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHN 130
Score = 33.1 bits (72), Expect = 0.051
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +2
Query: 425 IFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAFLCY 565
+F+ L ++ + + FS +G I + ++ D+ GK KGF F+CY
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQ-GKSKGFGFVCY 411
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 40.3 bits (90), Expect = 3e-04
Identities = 18/49 (36%), Positives = 30/49 (61%)
Frame = +2
Query: 425 IFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAFLCYED 571
+FVG L D+ + + FS+Y +V +VRD+ GK +GF F+ ++D
Sbjct: 32 LFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDR-EGKTRGFGFVSFKD 79
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 38.7 bits (86), Expect = 0.001
Identities = 16/45 (35%), Positives = 29/45 (64%)
Frame = +2
Query: 425 IFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAFL 559
+FVG LP D + + F + G++ ++ + DKT+G+ KG+AF+
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFV 138
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 37.9 bits (84), Expect = 0.002
Identities = 12/55 (21%), Positives = 34/55 (61%)
Frame = +2
Query: 425 IFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAFLCYEDQRSTTL 589
+++ GLP + ++ +++ +++G++ + + D T KG+ F C+E+++S +
Sbjct: 298 VYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEEEKSALI 352
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 37.5 bits (83), Expect = 0.002
Identities = 14/54 (25%), Positives = 30/54 (55%)
Frame = +2
Query: 425 IFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAFLCYEDQRSTT 586
+FV G+ + E ++ +FS++G + ++ ++R+ T +GF FL + T
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEAT 156
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 36.7 bits (81), Expect = 0.004
Identities = 16/52 (30%), Positives = 33/52 (63%)
Frame = +2
Query: 425 IFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAFLCYEDQRS 580
+FV L + D+ +FS++G+I++ ++RDK TG +AF+ ++++ S
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKES 297
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 36.7 bits (81), Expect = 0.004
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +2
Query: 425 IFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAFLCYED 571
+FVG L ++ E + F G I + +VRD T KGFA++ ++D
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKD 320
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 33.5 bits (73), Expect = 0.039
Identities = 17/45 (37%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Frame = +2
Query: 377 SSSKTSWHDQYKD-SAWIFVGGLPYDLTEGDVICVFSQYGEIVNI 508
++SK S QY+D S+ I+VG + L++ ++I FS+YG++ +I
Sbjct: 2 NNSKLSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQVESI 46
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 33.5 bits (73), Expect = 0.039
Identities = 13/50 (26%), Positives = 31/50 (62%)
Frame = +2
Query: 425 IFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAFLCYEDQ 574
I+VG LP+ ++ +++ +F+ G ++ + + TG+ KGF + +E++
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYE-PTGRSKGFGVVQFENE 330
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 32.7 bits (71), Expect = 0.068
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +2
Query: 344 NVLKLSERELGSSSKTSWHDQYKDSA--WIFVGGLPYDLTEGDVICVFSQYGEIVNINMV 517
NV+ +S +G S Q+ D+A +FVGGL ++E ++ +F +GEIV + +
Sbjct: 276 NVVPVSMPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIP 335
Query: 518 RDKTTG 535
K G
Sbjct: 336 PGKGCG 341
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 32.3 bits (70), Expect = 0.090
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Frame = +2
Query: 344 NVLKLSERELGSSSKTSWHDQYKDSAW----IFVGGLPYDLTEGDVICVFSQYGEIVNIN 511
NV + + SS K S + + +D+ +FV L ++ TE ++ F Q+G +
Sbjct: 248 NVDDVEDSGDSSSDKNSINHEIRDNEGLEDTVFVRNLLFECTEQELYNHFRQFGPLAYAK 307
Query: 512 MVRDKTTGKPKGFAFLCYEDQR 577
+V+D T + G F+ + ++
Sbjct: 308 LVKDPATDRSLGRGFIKFRYEK 329
Score = 29.5 bits (63), Expect = 0.63
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +2
Query: 425 IFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAFLCY 565
+FV L + + D+ FS G I + +V + TG+ +G+ F+ +
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTF 53
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 31.9 bits (69), Expect = 0.12
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 425 IFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTG 535
+FVGGL +L+E D+ F +G I+NI + K G
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCG 335
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 31.9 bits (69), Expect = 0.12
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +2
Query: 401 DQYKDSAWIFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAF 556
D+ +D A I++G L +T+ + + Q G +VNI++ RD+ GF F
Sbjct: 6 DRNQD-ATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGF 56
Score = 30.3 bits (65), Expect = 0.36
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +2
Query: 425 IFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAFLCYE 568
+FVG L + E + FS G++V V G+ KG+ F+ Y+
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYD 148
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 27.9 bits (59), Expect = 1.9
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +2
Query: 425 IFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAFLCYEDQR 577
+FVG +P T D++ F YG+I++ ++ GF F+ ED R
Sbjct: 6 LFVGRIPPQATREDMMDFFKGYGQILDCKLM--------NGFGFVEVEDAR 48
>SPBC146.10 |mug57||meiotically upregulated gene
Mug57|Schizosaccharomyces pombe|chr 2|||Manual
Length = 189
Score = 27.5 bits (58), Expect = 2.6
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 344 NVLKLSERELGSSSKTSWHDQYK 412
N+LK ER + +SS W+++YK
Sbjct: 118 NILKFVERHIITSSPIEWNNEYK 140
>SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 351
Score = 26.2 bits (55), Expect = 5.9
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 305 VKPVIMNPMTNVKNVLKLSERELGSSSKTSWHDQYKDSA 421
V PV + P +N N + R S+ SW DQ+ + A
Sbjct: 123 VHPVPVAPFSNPLNYNHQARRHAESTPNASWTDQFDNVA 161
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 25.8 bits (54), Expect = 7.8
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = +2
Query: 380 SSKTSWHDQYKDSAWIFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAF 556
+S S H + I G P L E + +++ ++ + ++R+K T K + FAF
Sbjct: 59 NSPLSRHIGVPNQEIILQGLTPEILEEHIELALYATGAKVSTVTLIREKETQKSRCFAF 117
>SPAPB1A11.01 ||SPAPB24D3.11|membrane
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 495
Score = 25.8 bits (54), Expect = 7.8
Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
Frame = -2
Query: 543 FGFP---VVLSLTMFIFTISPY*ENTHITSPSVKSYGSPPTNIHALSLY*SCQEVFELLP 373
FG P VVL T+++ + I SP + YG P NI +L+ Q L
Sbjct: 70 FGEPETLVVLGATLYVIGVML---GPLIFSPLSELYGRRPLNIFGYTLFALMQIPTALSV 126
Query: 372 NSRSLSFKTFFTFVIGFIMTGLTHGS 295
N FF+ G + G+ GS
Sbjct: 127 NLAMFVVFRFFSGFFGSVGLGIGAGS 152
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 25.8 bits (54), Expect = 7.8
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 434 GGLPYDLTEGDVICVFSQYGEIVNINMV 517
GGL D T+ + C F Y E VN +M+
Sbjct: 664 GGLTPDPTKDSIECCFWAYQEDVNSSMI 691
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 25.8 bits (54), Expect = 7.8
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Frame = -3
Query: 632 CTPKNLNTIQIVNXLKLLIFDPHSTKMQILLVSRLFYL---LPCLYLQ 498
CT L+ Q+ LK + DP + + LF L PCL LQ
Sbjct: 628 CTKLVLSKEQMPRTLKAIALDPQGNYVSLFSKDTLFILNVESPCLMLQ 675
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,964,346
Number of Sequences: 5004
Number of extensions: 59579
Number of successful extensions: 189
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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