Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_G13
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    32   0.094
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    29   1.2  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    28   2.0  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    27   3.5  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    27   3.5  
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c...    27   4.7  
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar...    26   6.1  

>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 32.3 bits (70), Expect = 0.094
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +1

Query: 592 EDLDALNE-FYGNDNPIVDKEKGANA*NVLDDDNIDVEIEGSVP 720
           +D D LN+    ND PI +    A   N+   D++D+++ G+VP
Sbjct: 238 DDYDELNDPMNNNDTPITNSTHSAQMSNLPTHDSMDIDMGGAVP 281


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 529 KDADNYHVHQLQEERNYIDYYEDLDALNEFYGNDNPI 639
           KDA+ +++H  +   NYI YY D       Y  D P+
Sbjct: 676 KDANRFYLHLGKLSENYIHYYVDSMYALFIYSTDIPL 712


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 180 NDGVVPMFCLP*HDQLYNKRGD-AREISRSHRNEFM 284
           +D  VP   LP   +L  K    A+++SRSHRNEF+
Sbjct: 233 SDVSVPSDVLPFTIKLLKKISQRAQDLSRSHRNEFL 268


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
 Frame = +1

Query: 502 DERNLDENRK----DADNYHVHQLQEERNYIDYYE-DLDALNEFYGNDNPIVDKEKGANA 666
           DE+N   N +    +A +Y     +E  N ++  + +L+  NE+Y    P  +++ GA A
Sbjct: 87  DEQNFSMNGETYPSEAYDYDYSGQEEAINAMNILQGNLERSNEYYSEGVPYSEEDLGAYA 146

Query: 667 *NVLDDDNI 693
             + +DD +
Sbjct: 147 GGMTEDDQM 155


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = +2

Query: 2   TXLSXXIHYREFLKIFESILKFRNVYLFTSSVVYLLTN**FKQKC---SLCLHMYFELIE 172
           T  S  I Y   +++   +LK R  Y   S + YLL +   K+     +  +H Y +L+ 
Sbjct: 700 TLFSSDIEYTPTIQLNRQVLKTRRTYNLFSDLGYLLQHPQVKKLVVDDTRYVHQYIDLLR 759

Query: 173 WFQ 181
            FQ
Sbjct: 760 VFQ 762


>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 499 CDERNLDENRKDADNYHVHQLQEERNYIDYYEDLDAL 609
           C E+ LDE  ++ DNY +  L+   + I  YE+ + +
Sbjct: 517 CGEKFLDERPEETDNY-LLTLESTEDTISSYEETEGI 552


>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
           lipase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 559 LQEERNYIDYYEDLDALNEFYGND 630
           LQE + Y ++ E   AL++++GND
Sbjct: 120 LQEAKTYEEWKERARALDKYFGND 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,058,734
Number of Sequences: 5004
Number of extensions: 65940
Number of successful extensions: 234
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)