Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_G13
         (878 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024796-3|AAK29895.4| 1161|Caenorhabditis elegans Hypothetical ...    31   1.4  
Z81542-5|CAB04420.2|  433|Caenorhabditis elegans Hypothetical pr...    30   2.5  
AF040654-3|AAK21451.2|  445|Caenorhabditis elegans Hypothetical ...    29   5.8  
Z82274-8|CAB05230.3|  467|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>AC024796-3|AAK29895.4| 1161|Caenorhabditis elegans Hypothetical
           protein Y48G1C.5 protein.
          Length = 1161

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +1

Query: 688 NIDVEIEGSVPDXIKVQNEFIEDHGGDGEMMIKMRD--XLNWTXTE 819
           NID E+E S      V N+ +E   G  E++   +D    NWT  E
Sbjct: 409 NIDTELEQSKSILKSVMNQLVESKSGHAEVLTVCKDMNNSNWTTAE 454


>Z81542-5|CAB04420.2|  433|Caenorhabditis elegans Hypothetical
           protein F49A5.8 protein.
          Length = 433

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 320 YSINYGYSDLNV*RGVLSILVCSVKMFLYVCKEPTRNATY 439
           ++I YG  D NV  G+L+I++C V + + + K    +  Y
Sbjct: 70  HNIQYGILDSNVFIGILAIILCLVHLMILLRKSLRTSGVY 109


>AF040654-3|AAK21451.2|  445|Caenorhabditis elegans Hypothetical
           protein R06B10.5 protein.
          Length = 445

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
 Frame = +2

Query: 419 PTRNATYCARSLTHAKPYRPGIAPNTFVM----NEIWTKIVKTQIIITYTSYKRKGI 577
           P R+A YC   + H   Y PG   +         +I TK++K +  +TY  +K  G+
Sbjct: 279 PVRDAFYCFVQICHK--YLPGYYSSGLEAVQTDGDILTKLIKDRSKLTYRHFKANGV 333


>Z82274-8|CAB05230.3|  467|Caenorhabditis elegans Hypothetical
           protein JC8.2 protein.
          Length = 467

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 676 LDDDNIDVEIEGSVPDXIKVQNEFIEDHGGDGEMMIKMR 792
           LDD+ +   IEG++P+    + E  +D   D E +  +R
Sbjct: 27  LDDEKLKELIEGAIPESTDNETELDDDEESDNEKLKGLR 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,635,263
Number of Sequences: 27780
Number of extensions: 361861
Number of successful extensions: 1188
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1188
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)