Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_G09
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    28   1.5  
SPAPJ695.01c |||S. pombe specific UPF0321 family protein 3|Schiz...    26   7.9  

>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 17/73 (23%), Positives = 30/73 (41%)
 Frame = +2

Query: 308 ANNN*XTMEFKLVRIDTSXPQXIDLPEGTHIIGRGKFIVNDAXXMRVSXNHAXIEVXDTC 487
           ++NN   +E ++  +    P  I  PEG +   +G++I        +  N+    V    
Sbjct: 212 SDNNLKKLEQEMEAMKMLKPLRITQPEGVNFRIKGRYIEWQNFCFHIGFNYREGIVLSDV 271

Query: 488 VILKSXHQNPCFY 526
           V  +  H  P FY
Sbjct: 272 VFNEDGHLRPLFY 284


>SPAPJ695.01c |||S. pombe specific UPF0321 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -3

Query: 200 N*QYCMYLVCGDLFXTVNN*LISNVFPINHDXQTYL 93
           N Q  M    GD+     N L++NV  IN+D   YL
Sbjct: 42  NQQGVMLFSTGDIRIGAYNYLVNNVTEINNDTDAYL 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,350,657
Number of Sequences: 5004
Number of extensions: 36045
Number of successful extensions: 69
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)