Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_G08
(898 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 85 1e-17
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy... 44 4e-05
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 33 0.042
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom... 29 0.68
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar... 26 6.3
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi... 26 8.4
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce... 26 8.4
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 26 8.4
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 85.0 bits (201), Expect = 1e-17
Identities = 44/150 (29%), Positives = 72/150 (48%), Gaps = 5/150 (3%)
Frame = +1
Query: 337 CGHYFCNDCWAMHFEVQIMQGVSNTIRCMAQNCEVRAPEDFVLSHVTKPALRDRYQQFMF 516
C H FC C+ + + +I +G S I+C ++C + + + +L DRY + +
Sbjct: 147 CDHEFCLACYRQYLDSRISEGES-VIQCPEESCTQIVSIQSITKVLDEKSL-DRYHRLLD 204
Query: 517 KDHVKSHPQLRFCPGPNCQW-----IFRAFIPEXAXXVXCXGXESSTCXSCGXPHHAPTD 681
+ V + LR+CP P+C++ + +A + V C C CG +H PT
Sbjct: 205 RSFVDDNDHLRWCPAPDCEFAIECHVTQASLSSVVPTVTC-NCGKQFCFGCGHDNHQPTI 263
Query: 682 CATIRXWLTXCADDSEXANYXXAHXXXRPK 771
C ++ WL C DDSE AN+ A+ PK
Sbjct: 264 CPLVKIWLQKCQDDSETANWIHANTKECPK 293
>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 43.6 bits (98), Expect = 4e-05
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Frame = +1
Query: 337 CGHYFCNDCWAMHFEVQIMQGVSNTIRCMAQNCEVRAPEDFV--LSHVTKPALRDRYQQF 510
CGH C C ++ + I +G+ + I+C+ +C AP + L + L +RY++
Sbjct: 192 CGHVSCQSCLRDYYTMCIQEGMFSQIKCIDLDCGKDAPVLTLKELESIVGVQLTNRYKEL 251
Query: 511 MFKDHVKSHPQLRFCPGPNCQ 573
K ++ + FCP CQ
Sbjct: 252 EEKRRYENDSNIIFCPRSFCQ 272
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 33.5 bits (73), Expect = 0.042
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = -1
Query: 439 PHSFEPCSVLYLRLLALFELQNAL--PNSRCKNNVHMLVHYTCAVEVCWHKQHNLICLIY 266
PHS CS ++ + L+L +L + L PN +N V +V + + C ++C+I+
Sbjct: 564 PHS---CSTMFPQTLSLMQLLDCLLNPNMTLQNLVEEMVRLGISRKRCERYPFGILCIIF 620
Query: 265 FVKALVASPY 236
V + A Y
Sbjct: 621 TVLEIAAEEY 630
>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1185
Score = 29.5 bits (63), Expect = 0.68
Identities = 14/70 (20%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +1
Query: 373 HFEVQIMQG-VSNTIRCMAQNCEVRAPEDFVLSHVTKPALRDRYQQFMFKDHVKSHPQLR 549
H E+Q+M N I ++C V+ V+ L + +Q ++ D +K +++
Sbjct: 242 HIEIQLMADKAGNVIHLHERDCSVQRRHQKVVEIAPAKDLDPKIRQALYDDAIKIAKEVK 301
Query: 550 FCPGPNCQWI 579
+C +++
Sbjct: 302 YCNAGTAEFL 311
>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 205
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +1
Query: 328 ALACGHYFCNDCWAMHFEVQIMQGVSNTIRCMAQNCEVRAPEDFV 462
A CGH FC+ C A T+ C Q+C R + F+
Sbjct: 164 AAKCGHLFCSTC-AKELR-------KKTVPCPVQHCRKRITKKFI 200
>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1419
Score = 25.8 bits (54), Expect = 8.4
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +1
Query: 448 PEDFVLSHVTKPALRDRYQQFMFKDHVKSHPQLRF 552
P D V VT A +Q + HV SHP+LRF
Sbjct: 1249 PADHVARVVTASAFHP--EQGVIVAHVTSHPRLRF 1281
>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 25.8 bits (54), Expect = 8.4
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = +1
Query: 364 WAMHFEVQIMQGVSNTIRCMAQNCEVRAPEDFVLSHVTKPALR 492
W H +Q+ +++T+ C A + V FV++++ +LR
Sbjct: 376 WITHHYIQLGYQLADTVSCAAYSFAVSCALLFVMNYIPGLSLR 418
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 25.8 bits (54), Expect = 8.4
Identities = 15/58 (25%), Positives = 23/58 (39%)
Frame = +1
Query: 337 CGHYFCNDCWAMHFEVQIMQGVSNTIRCMAQNCEVRAPEDFVLSHVTKPALRDRYQQF 510
CGH FC C +MQ ++ + +C C P VL H ++ + F
Sbjct: 184 CGHTFCGPC--------LMQALTQSPQC--PTCRFGLPSPVVLEHAKSHSITTFLRDF 231
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,749,329
Number of Sequences: 5004
Number of extensions: 53344
Number of successful extensions: 144
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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