Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_G07
(871 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0027 - 225670-225870,225989-226126,226315-226392,226523-22... 32 0.69
11_01_0027 - 199196-199396,199514-199651,200207-200284,200419-20... 32 0.69
06_03_0383 - 20154045-20154712,20154969-20155122,20155780-201558... 30 2.8
08_02_0210 + 14324539-14324609,14324735-14325740,14325838-143273... 29 3.7
06_01_1085 - 8886868-8887556,8887629-8888574 29 3.7
05_05_0227 - 23449579-23450459,23450574-23450691 29 6.4
09_04_0202 - 15544498-15545037,15546043-15546449,15546874-155469... 28 8.5
08_01_0444 - 3934777-3936130,3939744-3940141 28 8.5
07_03_1782 + 29477748-29478169,29478257-29478413,29478518-294786... 28 8.5
>12_01_0027 -
225670-225870,225989-226126,226315-226392,226523-226708,
226853-226945,227797-227863,228660-228964
Length = 355
Score = 31.9 bits (69), Expect = 0.69
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -1
Query: 553 HLVAATEVVESVAGQLFRRQKRNGPL-IKGFQTFLFTTHVGHIRKEVECVV 404
HLV AT+ V G+ +R +++GPL + F L + V H +V VV
Sbjct: 285 HLVEATKAARPVLGRYYREPEKSGPLPLHLFGVLLRSLRVDHFVSDVGDVV 335
>11_01_0027 -
199196-199396,199514-199651,200207-200284,200419-200604,
200754-200846,201665-201731,202374-202675
Length = 354
Score = 31.9 bits (69), Expect = 0.69
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -1
Query: 553 HLVAATEVVESVAGQLFRRQKRNGPL-IKGFQTFLFTTHVGHIRKEVECVV 404
HLV AT+ V G+ +R +++GPL + F L + V H +V VV
Sbjct: 284 HLVEATKAARPVLGRYYREPEKSGPLPLHLFGVLLRSLRVDHFVSDVGDVV 334
>06_03_0383 -
20154045-20154712,20154969-20155122,20155780-20155896,
20157395-20157466
Length = 336
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +2
Query: 650 RKXMYANAGGEAAAVGRDECGASAATQPPRMPGPVHARVLHRGRAARHLQGL 805
R+ Y + GG + V + E G P +P PV L G A HL+ +
Sbjct: 175 RRSTYVDGGG-GSGVKKGEGGGDQQPWSPGVPDPVVPNHLETGSGAHHLEAI 225
>08_02_0210 + 14324539-14324609,14324735-14325740,14325838-14327390,
14327473-14327601,14328345-14328510
Length = 974
Score = 29.5 bits (63), Expect = 3.7
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 11/62 (17%)
Frame = +2
Query: 617 HRRWAPQCPFVRKXMYANAGGEAAAVGRDECGASAATQPPRM-----------PGPVHAR 763
HR +P+CP + + N+ + +G C A A+T P R PGPV R
Sbjct: 862 HRATSPKCPLNSQKIMKNSDKQGRPLGSTSCAAGAST-PKRQKVSRNDSSNASPGPVSER 920
Query: 764 VL 769
V+
Sbjct: 921 VV 922
>06_01_1085 - 8886868-8887556,8887629-8888574
Length = 544
Score = 29.5 bits (63), Expect = 3.7
Identities = 23/62 (37%), Positives = 28/62 (45%)
Frame = +2
Query: 638 CPFVRKXMYANAGGEAAAVGRDECGASAATQPPRMPGPVHARVLHRGRAARHLQGLAXMX 817
C V Y +GG A GR G +A T PP +P + L RGR R L+ LA
Sbjct: 20 CLVVAVRSYLRSGG--ADGGR---GGAAITSPPALPVIGNLHQLGRGRHHRALRELARRH 74
Query: 818 AP 823
P
Sbjct: 75 GP 76
>05_05_0227 - 23449579-23450459,23450574-23450691
Length = 332
Score = 28.7 bits (61), Expect = 6.4
Identities = 25/86 (29%), Positives = 34/86 (39%)
Frame = +2
Query: 608 AADHRRWAPQCPFVRKXMYANAGGEAAAVGRDECGASAATQPPRMPGPVHARVLHRGRAA 787
A + R W P + + A+ GG DE GA AA + M H +LH
Sbjct: 118 AQEGRPWQSPSPVSSQELGASGGGGGLPRPPDEPGAVAAAR--LMDPAFHKELLHALDNL 175
Query: 788 RHLQGLAXMXAPKTRXTGXGRILLYR 865
R L + + P+ G GR L R
Sbjct: 176 RSL--IVTIEQPRPASGGGGRALTRR 199
>09_04_0202 -
15544498-15545037,15546043-15546449,15546874-15546977,
15547580-15547788,15548092-15549428,15551680-15551941
Length = 952
Score = 28.3 bits (60), Expect = 8.5
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = -1
Query: 712 PTFVSTDSGRLS-PSVGIHXFSYKGTLGRPSPMIGSRIVAFDPPHDFY 572
PT S D R S ++G H S+ L S+I A+D P DFY
Sbjct: 679 PTINSIDELRKSGENIGYHDGSFVKNLLEDLNFNTSKIKAYDTPDDFY 726
>08_01_0444 - 3934777-3936130,3939744-3940141
Length = 583
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 677 GEAAAVGRDECGASAATQPPRMPGPVHARVLHRGRAA 787
GEAA + C A+ ++ PR+ G + A HR R A
Sbjct: 487 GEAAEMWNGMCRATRLSRVPRLDGVIRAVNEHRSRRA 523
>07_03_1782 +
29477748-29478169,29478257-29478413,29478518-29478610,
29478753-29478938,29479107-29479187,29479788-29479925,
29480044-29480208
Length = 413
Score = 28.3 bits (60), Expect = 8.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -1
Query: 553 HLVAATEVVESVAGQLFRRQKRNGP 479
HL+ ATE + V G+ +R ++GP
Sbjct: 355 HLIEATEAAKGVMGKYYREPDKSGP 379
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,634,181
Number of Sequences: 37544
Number of extensions: 435769
Number of successful extensions: 1345
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1344
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -