Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_G07
         (871 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    25   0.91 
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   4.8  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   4.8  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   4.8  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   6.4  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   6.4  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   8.5  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   8.5  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 25.0 bits (52), Expect = 0.91
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 648 YENXCMPTLGERRPLSVETNV 710
           YEN  +PT G+  P  V+TN+
Sbjct: 48  YENNQLPTHGKGTPTVVKTNI 68


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -3

Query: 464 SDVPLHDACR 435
           SD+PLHDA R
Sbjct: 331 SDIPLHDATR 340


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -3

Query: 464 SDVPLHDACR 435
           SD+PLHDA R
Sbjct: 411 SDIPLHDATR 420


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -3

Query: 464 SDVPLHDACR 435
           SD+PLHDA R
Sbjct: 331 SDIPLHDATR 340


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 15/60 (25%), Positives = 25/60 (41%)
 Frame = -3

Query: 248 ATFVNSIGIFFLFFSNA*NVYSYVFV*SLTLVLQKQNSMKFQNVNAARQEPSSXLKKSAE 69
           A+++   GI+  F      +YSY F+       +K    + + +N A    S     SAE
Sbjct: 214 ASYLVCYGIWVYFVPLFLIIYSYWFIIQAVAAHEKNMREQAKKMNVASLRSSENQNTSAE 273


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 15/60 (25%), Positives = 25/60 (41%)
 Frame = -3

Query: 248 ATFVNSIGIFFLFFSNA*NVYSYVFV*SLTLVLQKQNSMKFQNVNAARQEPSSXLKKSAE 69
           A+++   GI+  F      +YSY F+       +K    + + +N A    S     SAE
Sbjct: 90  ASYLVCYGIWVYFVPLFLIIYSYWFIIQAVAAHEKNMREQAKKMNVASLRSSENQNTSAE 149


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = +1

Query: 514 PQRILLPRSRRRGV 555
           P+R+LLP+ ++ G+
Sbjct: 599 PERLLLPKGKKEGM 612


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = +1

Query: 514 PQRILLPRSRRRGV 555
           P+R+LLP+ ++ G+
Sbjct: 599 PERLLLPKGKKEGM 612


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,338
Number of Sequences: 438
Number of extensions: 4370
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)