Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_G05
         (1023 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.2  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   7.4  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   9.8  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    26   9.8  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +3

Query: 795 PAPFPP*XSPPXXPPPXVPP 854
           P P PP   PP  PPP  PP
Sbjct: 11  PPPPPPGFEPPSQPPPPPPP 30


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +3

Query: 789  VXPAPFPP*XSPPXXPPPXVPPXPR 863
            + P P P    PP  PP   PP P+
Sbjct: 1178 IPPVPKPAAGVPPVPPPSEAPPVPK 1202



 Score = 27.5 bits (58), Expect = 3.2
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +3

Query: 768  PXPXAL*VXPAPFPP*XSPPXXPPPXVPPXP 860
            P P      P P P    PP  PP   PP P
Sbjct: 1190 PVPPPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220



 Score = 26.2 bits (55), Expect = 7.4
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = +3

Query: 768  PXPXAL*VXPAPFPP*XSPPXXPPPXVPPXPR 863
            P P      P P P   +PP   P   PP P+
Sbjct: 1132 PVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPK 1163



 Score = 25.8 bits (54), Expect = 9.8
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = +3

Query: 768  PXPXAL*VXPAPFPP*XSPPXXPPPXVPPXPR 863
            P P      P P P   +PP   P   PP P+
Sbjct: 1113 PVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPK 1144


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = +3

Query: 795  PAPFPP*XSPPXXPPPXVPPXP 860
            P P PP  S P  PPP  PP P
Sbjct: 1705 PTPPPPPMSVP--PPPSAPPMP 1724


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -1

Query: 507 RXXXPXXTPXPRAXXPXPSRQAGTXPKRPP 418
           R   P   P P+     PS+ A T P +PP
Sbjct: 367 RKTGPTPGPKPKIKSSAPSKPAETAPVKPP 396


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 13/25 (52%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
 Frame = -1

Query: 900 RAXRGGXRXP--GXNGGXGGXRGGG 832
           R  RGG      G  GG GG RGGG
Sbjct: 15  RGGRGGFNGGRGGFGGGRGGARGGG 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,680,423
Number of Sequences: 5004
Number of extensions: 15241
Number of successful extensions: 73
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 533248662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)