Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_G05
(1023 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical pr... 33 0.25
AC006708-23|AAF60414.1| 975|Caenorhabditis elegans Paz/piwi dom... 32 0.76
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 31 1.8
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 31 1.8
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 31 1.8
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 31 1.8
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 30 2.3
AF125462-1|AAD12858.2| 244|Caenorhabditis elegans Hypothetical ... 30 2.3
AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical ... 30 3.1
AF003139-7|AAB54162.2| 512|Caenorhabditis elegans Defective spe... 30 3.1
AF016672-7|AAB66119.1| 378|Caenorhabditis elegans Vig (drosophi... 29 4.0
Z69383-13|CAA93404.2| 181|Caenorhabditis elegans Hypothetical p... 28 9.3
>Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical
protein Y48E1B.1 protein.
Length = 497
Score = 33.5 bits (73), Expect = 0.25
Identities = 15/31 (48%), Positives = 15/31 (48%)
Frame = +3
Query: 768 PXPXAL*VXPAPFPP*XSPPXXPPPXVPPXP 860
P P A V PP SPP PPP PP P
Sbjct: 336 PQPAATPVEITEIPPIISPPAPPPPPPPPPP 366
Score = 28.7 bits (61), Expect = 7.1
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +3
Query: 795 PAPFPP*XSPPXXPPPXVP 851
PAP PP PP PPP P
Sbjct: 355 PAPPPPPPPPPPPPPPQTP 373
>AC006708-23|AAF60414.1| 975|Caenorhabditis elegans Paz/piwi
domain-containing protein2 protein.
Length = 975
Score = 31.9 bits (69), Expect = 0.76
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = +3
Query: 789 VXPAPFPP*XSPP-XXPPPXVPPXP 860
V P FPP +PP PPP VPP P
Sbjct: 14 VPPVGFPPVTAPPGLHPPPPVPPVP 38
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 30.7 bits (66), Expect = 1.8
Identities = 25/94 (26%), Positives = 27/94 (28%), Gaps = 1/94 (1%)
Frame = -1
Query: 495 PXXTPXPRAXXPXPSRQAGTXPKRPPGXXGP-XKCNAX*RXGXXVXXXXXEPGAXKRXPX 319
P P P P+ +G P PPG GP A G E G
Sbjct: 163 PPGPPGPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGP 222
Query: 318 XAXXXPKGRAGFHNXXXK*GVXPXXPYGXLGLGG 217
P G AG G P P G G G
Sbjct: 223 AGPPGPAGPAGNDGAPGTGGPGPAGPKGPPGAAG 256
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 30.7 bits (66), Expect = 1.8
Identities = 25/94 (26%), Positives = 27/94 (28%), Gaps = 1/94 (1%)
Frame = -1
Query: 495 PXXTPXPRAXXPXPSRQAGTXPKRPPGXXGP-XKCNAX*RXGXXVXXXXXEPGAXKRXPX 319
P P P P+ +G P PPG GP A G E G
Sbjct: 163 PPGPPGPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGP 222
Query: 318 XAXXXPKGRAGFHNXXXK*GVXPXXPYGXLGLGG 217
P G AG G P P G G G
Sbjct: 223 AGPPGPAGPAGNDGAPGTGGPGPAGPKGPPGAAG 256
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 30.7 bits (66), Expect = 1.8
Identities = 25/94 (26%), Positives = 27/94 (28%), Gaps = 1/94 (1%)
Frame = -1
Query: 495 PXXTPXPRAXXPXPSRQAGTXPKRPPGXXGP-XKCNAX*RXGXXVXXXXXEPGAXKRXPX 319
P P P P+ +G P PPG GP A G E G
Sbjct: 163 PPGPPGPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGP 222
Query: 318 XAXXXPKGRAGFHNXXXK*GVXPXXPYGXLGLGG 217
P G AG G P P G G G
Sbjct: 223 AGPPGPAGPAGNDGAPGTGGPGPAGPKGPPGAAG 256
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 30.7 bits (66), Expect = 1.8
Identities = 25/94 (26%), Positives = 27/94 (28%), Gaps = 1/94 (1%)
Frame = -1
Query: 495 PXXTPXPRAXXPXPSRQAGTXPKRPPGXXGP-XKCNAX*RXGXXVXXXXXEPGAXKRXPX 319
P P P P+ +G P PPG GP A G E G
Sbjct: 163 PPGPPGPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGP 222
Query: 318 XAXXXPKGRAGFHNXXXK*GVXPXXPYGXLGLGG 217
P G AG G P P G G G
Sbjct: 223 AGPPGPAGPAGNDGAPGTGGPGPAGPKGPPGAAG 256
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 30.3 bits (65), Expect = 2.3
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +3
Query: 795 PAPFPP*XSPPXXPPPXVPPXP 860
P P PP +P PPP PP P
Sbjct: 499 PPPLPPIATPSSVPPPPPPPPP 520
>AF125462-1|AAD12858.2| 244|Caenorhabditis elegans Hypothetical
protein Y66H1A.4 protein.
Length = 244
Score = 30.3 bits (65), Expect = 2.3
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = -1
Query: 900 RAXRGGXRXPGXNGGXGGXRGGG 832
R RGG G GG GG RGGG
Sbjct: 14 RGGRGGGGGGGFRGGRGGDRGGG 36
Score = 30.3 bits (65), Expect = 2.3
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = -1
Query: 900 RAXRGGXRXPGXNGGXGGXRGGG 832
R RGG R G GG GG GGG
Sbjct: 26 RGGRGGDRGGGFRGGRGGFGGGG 48
>AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical
protein ZC123.1 protein.
Length = 730
Score = 29.9 bits (64), Expect = 3.1
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +3
Query: 795 PAPFPP*XSPPXXPPPXVPPXPRXCXXS 878
P P P PP PPP P P C S
Sbjct: 134 PPPTPAAPPPPPPPPPPAPEAPTQCCGS 161
>AF003139-7|AAB54162.2| 512|Caenorhabditis elegans Defective
spermatogenesis protein 8 protein.
Length = 512
Score = 29.9 bits (64), Expect = 3.1
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +3
Query: 774 PXAL*VXPAPFPP*XSPPXXPPPXVPPXP 860
P L V P P P +P PPP PP P
Sbjct: 50 PIQLVVQPTPLTPAITPCEAPPPPPPPKP 78
>AF016672-7|AAB66119.1| 378|Caenorhabditis elegans Vig (drosophila
vasa intronic gene)ortholog protein 1, isoform a
protein.
Length = 378
Score = 29.5 bits (63), Expect = 4.0
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = -1
Query: 900 RAXRGGXRXPGXNGGXGGXRGGG 832
R RGG R G GG GG R GG
Sbjct: 334 RPQRGGPRGGGRGGGRGGQRQGG 356
>Z69383-13|CAA93404.2| 181|Caenorhabditis elegans Hypothetical
protein F13E9.8 protein.
Length = 181
Score = 28.3 bits (60), Expect = 9.3
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = -1
Query: 915 HXSPXRAXRGGXRXPGXNGGXGGXRGGG 832
H P GG PG GG GG G G
Sbjct: 130 HPGPPHGGPGGPGGPGGRGGRGGHGGPG 157
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,869,542
Number of Sequences: 27780
Number of extensions: 155142
Number of successful extensions: 1408
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1250
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2699257404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -