Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_G02
         (906 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       28   0.13 
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   3.8  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   5.1  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   8.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.9 bits (59), Expect = 0.13
 Identities = 16/48 (33%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
 Frame = +3

Query: 648 PPPXKPXPKXXXPPPXXXPP-PQXXPXKXXGXXPPRGXPPXXPPXXSP 788
           P    P P+   P P   P  PQ          PP G PP  PP  +P
Sbjct: 16  PSSGAPGPQ---PSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 24.6 bits (51), Expect = 1.3
 Identities = 14/52 (26%), Positives = 18/52 (34%), Gaps = 3/52 (5%)
 Frame = +1

Query: 688 PPXGXPPPKXAXXKXXGXXPPGXXPXXA---PPXSPPPXPPXXXPPXXXXPP 834
           P  G P P+ +  +       G  P  +   PP  PP  PP   P      P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISP 67



 Score = 23.8 bits (49), Expect = 2.2
 Identities = 12/47 (25%), Positives = 15/47 (31%)
 Frame = +3

Query: 546 PGPXXTXXKXXQXRAXXXPXXXNGXXXXGXPXGPPPPXKPXPKXXXP 686
           PGP  +  +  Q      P   +     G P G PP   P      P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISP 67



 Score = 22.2 bits (45), Expect = 6.7
 Identities = 16/59 (27%), Positives = 17/59 (28%)
 Frame = +1

Query: 613 TAXSXXXXPXGPPPPXNPXQKXXPPPPXGXPPPKXAXXKXXGXXPPGXXPXXAPPXSPP 789
           T  S       P P  +P Q    P     P P           PP   P  APP   P
Sbjct: 10  TQQSQQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQG--------PPPGGPPGAPPSQNP 60



 Score = 21.8 bits (44), Expect = 8.8
 Identities = 17/60 (28%), Positives = 18/60 (30%)
 Frame = +1

Query: 508 PEQGXKGGXKGXPQXPGXPXKKXXXQGPXXXQXPXTAXSXXXXPXGPPPPXNPXQKXXPP 687
           P  G  G      Q P  P +      P   Q P         P G PP  NP Q    P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQR---GSPPNPSQGPPPGG-----PPGAPPSQNPSQMMISP 67


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 11/41 (26%), Positives = 12/41 (29%)
 Frame = -2

Query: 479 PXXXXGPGGXPXKQXPXPXPXPRPXSXXXPPXPRGXPGTXK 357
           P     P   P    P   P PRP        P   PG  +
Sbjct: 114 PRLRREPEAEPGNNRPVYIPQPRPPHPRLRREPEAEPGNNR 154


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 744 PPRGXPPXXPPXXSPP 791
           PP+  PP  PP  S P
Sbjct: 338 PPKPAPPPPPPSSSGP 353


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = -1

Query: 708 GGXXXGGGGXXFLGGVXXGGGAXG 637
           GG   G  G   + G   GGG  G
Sbjct: 28  GGVVTGASGGSIVVGANNGGGGGG 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.313    0.153    0.546 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,725
Number of Sequences: 438
Number of extensions: 10498
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)