Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_G01
         (963 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0507 + 3655570-3655573,3655648-3655832                           38   0.012
01_03_0126 + 12741397-12743022                                         29   5.5  
01_01_0572 - 4244714-4245311,4245694-4245736,4246172-4246283,424...    29   7.3  
02_02_0400 + 9836045-9837115,9837474-9838577                           28   9.6  

>06_01_0507 + 3655570-3655573,3655648-3655832
          Length = 62

 Score = 37.9 bits (84), Expect = 0.012
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = +1

Query: 376 GKVHGSWARAGKVKGQTP 429
           GKVHGS ARAGKV+GQTP
Sbjct: 2   GKVHGSLARAGKVRGQTP 19



 Score = 37.9 bits (84), Expect = 0.012
 Identities = 15/23 (65%), Positives = 19/23 (82%)
 Frame = +2

Query: 485 IQYNRRFVNVVQTFGRRRGPNSN 553
           +QYNRRFV  V  FG++RGPNS+
Sbjct: 38  MQYNRRFVTAVVGFGKKRGPNSS 60


>01_03_0126 + 12741397-12743022
          Length = 541

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 407 PARAQDPCTLPPSTWQ 360
           PA +  PC LPP TW+
Sbjct: 88  PAASASPCALPPGTWE 103


>01_01_0572 -
           4244714-4245311,4245694-4245736,4246172-4246283,
           4246462-4246551,4246625-4246787,4246909-4247015,
           4247149-4247230,4247314-4247351,4247434-4247542,
           4248031-4248095,4248358-4248468,4248610-4248747
          Length = 551

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 425 VCPLTXPARAQDPCTLPPSTWQLSXIVQMMRARE 324
           V P   P   +DPC L   +W+L+ ++  +R  E
Sbjct: 16  VDPPASPPAPEDPCVLLRRSWELASVLHFLRVFE 49


>02_02_0400 + 9836045-9837115,9837474-9838577
          Length = 724

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 468 PXXXVXFSTTEDLSTLCRPSDVVAD 542
           P   +  S  E L+TLC P DVV D
Sbjct: 438 PGAKICCSAAEHLTTLCTPDDVVLD 462


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,751,234
Number of Sequences: 37544
Number of extensions: 151258
Number of successful extensions: 245
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2788108120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)