Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_G01
         (963 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53148-5|AAB37076.1|  130|Caenorhabditis elegans Ribosomal prote...    41   0.001

>U53148-5|AAB37076.1|  130|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 30 protein.
          Length = 130

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 20/42 (47%), Positives = 25/42 (59%)
 Frame = +1

Query: 346 TIXDSCHVLGGKVHGSWARAGKVKGQTPXXEXXXXXXXXTGR 471
           T+  +  +LGGKVHGS ARAGKV+ QTP  +         GR
Sbjct: 61  TLSVNGRLLGGKVHGSLARAGKVRAQTPKVDKQDKKKKKRGR 102



 Score = 37.9 bits (84), Expect = 0.011
 Identities = 15/24 (62%), Positives = 19/24 (79%)
 Frame = +2

Query: 485 IQYNRRFVNVVQTFGRRRGPNSNS 556
           +QY RR+VNV    G++RGPNSNS
Sbjct: 107 VQYTRRYVNVASGPGKKRGPNSNS 130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,067,052
Number of Sequences: 27780
Number of extensions: 126152
Number of successful extensions: 181
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2490012644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)