Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_F23
         (901 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos...    29   0.68 
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo...    29   0.90 
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   8.4  
SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   8.4  
SPAC637.03 |||conserved fungal protein|Schizosaccharomyces pombe...    26   8.4  

>SPBC1348.07 |||S. pombe specific DUF999 protein family
           6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 29.5 bits (63), Expect = 0.68
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -1

Query: 382 VCLTILLLFSITIGFILFIFGVITAGLVILTVGCRLYVTF*-ILFFCIWLIYISVIL 215
           +CL ILLL  +     + +  +    +VI  V   + V    IL+ C WLIY  +IL
Sbjct: 128 ICLFILLLLGLIYCSKIVVKAIPLISIVIAAVVVIIAVAMVKILYICHWLIYKILIL 184


>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
           8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -1

Query: 382 VCLTILLLFSITIGFILFIFGVITAGLVILTVGCRLYVTF*-ILFFCIWLIYISVIL 215
           +CL +LLL  +     + +  +    +VI  V   + V    IL+ C WLIY  +IL
Sbjct: 128 ICLFVLLLLGLIYCSKIVVKAIPLISIVIAAVVVIIAVAMVKILYICHWLIYKILIL 184


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = +2

Query: 170 RTRRVSRCGFKILRPK---DNADVDQPDAKEENLEGDVKTTAN 289
           R++     G+K L+PK   D++ VD+  AK+     ++   AN
Sbjct: 466 RSKFAELLGYKTLKPKNDEDDSKVDESVAKDSTTPNELSKNAN 508


>SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 96

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 298 ILTVGCRLYVTF*ILFFCIWLI-YIS 224
           +LT+ C  +V F I +FC  L+ YIS
Sbjct: 6   VLTIRCTFHVLFAICYFCDHLLQYIS 31


>SPAC637.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 269

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = -1

Query: 364 LLFSITIGFILFIFGVITAGLVILTVGCRLYVTF*ILFFCIWLIYISVILG 212
           L+F  ++ F+++ F   +A L    +GCR++    I FF    +Y+  ILG
Sbjct: 147 LVFGKSLWFVVYAF---SAALHCTGIGCRVFSNVFIWFFA--AMYLVPILG 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,069,580
Number of Sequences: 5004
Number of extensions: 31035
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)