Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_F23
(901 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 33 0.37
U55369-1|AAK52175.1| 1247|Caenorhabditis elegans Cystic fibrosis... 30 2.6
Z75711-8|CAJ43907.1| 118|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z83117-6|CAN86902.1| 1931|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z83117-5|CAN86901.1| 1971|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z83117-4|CAB05572.2| 2032|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z80219-10|CAN86596.1| 1931|Caenorhabditis elegans Hypothetical p... 28 7.9
Z80219-9|CAN86595.1| 1971|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z80219-8|CAB02303.2| 2032|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z72505-1|CAA96608.1| 338|Caenorhabditis elegans Hypothetical pr... 28 7.9
AJ276020-1|CAC81668.1| 1971|Caenorhabditis elegans putative TRP ... 28 7.9
AF003390-2|AAP31432.1| 341|Caenorhabditis elegans Hypothetical ... 28 7.9
AF003390-1|AAB54271.2| 473|Caenorhabditis elegans Hypothetical ... 28 7.9
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 32.7 bits (71), Expect = 0.37
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -3
Query: 419 YHYSSHRLFHLHRVSHHSPSF*YHYRFYPFHLWSHHRRSRH 297
+H+ SH + H H +HHS + H+ + H +HH + H
Sbjct: 646 HHHGSHGVHHGHHGTHHSLAHHGHHGGHGTHHGAHHSPAHH 686
Score = 31.5 bits (68), Expect = 0.85
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -3
Query: 425 HPYHYSSHRLFHLHRVSHHSPSF*YHYRFYPFHLWSHHRRSRH 297
H H+ H H H SHHSP+ H+ + H +HH H
Sbjct: 538 HHGHHGEHGTHHGHHGSHHSPAHHGHHGEH-HHAPAHHGHHGH 579
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 425 HPYHYSSHRLFHLHRVSHHSPSF*YHYRFYPFHLWSHH 312
H H+ H H H SHHSP+ H+ + H +HH
Sbjct: 480 HHGHHGEHGTHHGHHGSHHSPAHHGHHGEH-HHAPAHH 516
>U55369-1|AAK52175.1| 1247|Caenorhabditis elegans Cystic fibrosis
transmembrane conductanceregulator homolog protein 1
protein.
Length = 1247
Score = 29.9 bits (64), Expect = 2.6
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = -1
Query: 412 TLHIVFFIFIVCLTILLLFSITIGFILFIFGVI 314
TLHI+ IVC+ + + + F++F+ G++
Sbjct: 817 TLHILMIFAIVCVNVPVFAIFVVAFLIFLVGLL 849
>Z75711-8|CAJ43907.1| 118|Caenorhabditis elegans Hypothetical
protein K02B12.9 protein.
Length = 118
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -3
Query: 413 YSSHRLFHLHRVSHHSPSF*YHYRFYPFHLWSHHRRSRHPY 291
Y S+ + H+ SH+ PS+ YH + P + H ++S + Y
Sbjct: 43 YESYGKYDDHKDSHYQPSY-YHDSYEPKYNSGHDQKSGNDY 82
>Z83117-6|CAN86902.1| 1931|Caenorhabditis elegans Hypothetical protein
T01H8.5d protein.
Length = 1931
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 379 CLTILLLFSITIGFILFIFGVITAGLVIL 293
C+TIL + +GF + FG + G VIL
Sbjct: 1279 CVTILAIIFYIVGFFMRCFGSVAYGRVIL 1307
>Z83117-5|CAN86901.1| 1971|Caenorhabditis elegans Hypothetical protein
T01H8.5c protein.
Length = 1971
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 379 CLTILLLFSITIGFILFIFGVITAGLVIL 293
C+TIL + +GF + FG + G VIL
Sbjct: 1319 CVTILAIIFYIVGFFMRCFGSVAYGRVIL 1347
>Z83117-4|CAB05572.2| 2032|Caenorhabditis elegans Hypothetical protein
T01H8.5a protein.
Length = 2032
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 379 CLTILLLFSITIGFILFIFGVITAGLVIL 293
C+TIL + +GF + FG + G VIL
Sbjct: 1380 CVTILAIIFYIVGFFMRCFGSVAYGRVIL 1408
>Z80219-10|CAN86596.1| 1931|Caenorhabditis elegans Hypothetical
protein T01H8.5d protein.
Length = 1931
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 379 CLTILLLFSITIGFILFIFGVITAGLVIL 293
C+TIL + +GF + FG + G VIL
Sbjct: 1279 CVTILAIIFYIVGFFMRCFGSVAYGRVIL 1307
>Z80219-9|CAN86595.1| 1971|Caenorhabditis elegans Hypothetical protein
T01H8.5c protein.
Length = 1971
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 379 CLTILLLFSITIGFILFIFGVITAGLVIL 293
C+TIL + +GF + FG + G VIL
Sbjct: 1319 CVTILAIIFYIVGFFMRCFGSVAYGRVIL 1347
>Z80219-8|CAB02303.2| 2032|Caenorhabditis elegans Hypothetical protein
T01H8.5a protein.
Length = 2032
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 379 CLTILLLFSITIGFILFIFGVITAGLVIL 293
C+TIL + +GF + FG + G VIL
Sbjct: 1380 CVTILAIIFYIVGFFMRCFGSVAYGRVIL 1408
>Z72505-1|CAA96608.1| 338|Caenorhabditis elegans Hypothetical
protein C50C10.2 protein.
Length = 338
Score = 28.3 bits (60), Expect = 7.9
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -1
Query: 427 CTLIITLHIVFFIFIVCLTILLLFSITIGFILFIFGVITAGLVILTVG 284
C LI+ + F+FIV L + L T+GF + T G +IL G
Sbjct: 146 CRLIMYRFAIPFLFIVPLALSLFNVTTVGFCKQLNPPFTFGSIILYEG 193
>AJ276020-1|CAC81668.1| 1971|Caenorhabditis elegans putative TRP
homologous cationchannel protein.
Length = 1971
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 379 CLTILLLFSITIGFILFIFGVITAGLVIL 293
C+TIL + +GF + FG + G VIL
Sbjct: 1319 CVTILAIIFYIVGFFMRCFGSVAYGRVIL 1347
>AF003390-2|AAP31432.1| 341|Caenorhabditis elegans Hypothetical
protein R155.1b protein.
Length = 341
Score = 28.3 bits (60), Expect = 7.9
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -1
Query: 364 LLFSITIGFILFIFGVITAGLVILTVGCRLYVTF*ILFFCIWLIYISVIL 215
L S ++GF +FG+I I V ++ F I++F +W I V+L
Sbjct: 271 LTISYSMGFAFLMFGLIKTKYWIGPVKSLYFIGF-IIYFIVWPILHMVLL 319
>AF003390-1|AAB54271.2| 473|Caenorhabditis elegans Hypothetical
protein R155.1a protein.
Length = 473
Score = 28.3 bits (60), Expect = 7.9
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -1
Query: 364 LLFSITIGFILFIFGVITAGLVILTVGCRLYVTF*ILFFCIWLIYISVIL 215
L S ++GF +FG+I I V ++ F I++F +W I V+L
Sbjct: 403 LTISYSMGFAFLMFGLIKTKYWIGPVKSLYFIGF-IIYFIVWPILHMVLL 451
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,440,101
Number of Sequences: 27780
Number of extensions: 175491
Number of successful extensions: 767
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -