Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_F22
         (850 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0147 + 12763526-12763815,12763938-12764067,12764185-127644...    31   1.5  
12_01_0991 - 10057736-10058249,10058412-10059241,10059266-100606...    28   8.2  

>09_03_0147 +
           12763526-12763815,12763938-12764067,12764185-12764435,
           12764546-12764750,12764878-12764918,12765006-12765131,
           12765429-12765502,12765671-12765891,12766251-12766345,
           12766463-12766679,12766781-12766906,12766988-12767086,
           12767171-12767380,12767496-12767606
          Length = 731

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = +1

Query: 352 GQHIVFVASVLWMQGPQMTLQPLENECGILLYNGDIFDESWDSRTSDTQIIM 507
           G  + +  ++ WM GP +    L N   + LYNG +    +     D ++ M
Sbjct: 401 GDVVAWPTNLGWMMGPWLVYASLLNGASMALYNGSLNSSGFAKFVQDAKVTM 452


>12_01_0991 -
           10057736-10058249,10058412-10059241,10059266-10060633,
           10061785-10062327,10066274-10066498,10066590-10066640
          Length = 1176

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 16/59 (27%), Positives = 32/59 (54%)
 Frame = +1

Query: 121 ISLALLTHV*ATSVVFLNHLKL*IAVDRLDTVIDSMCGIFLELSCEKCSIVNDIDVLRR 297
           ++L+ L+H+ +   + +NH+ L  AVD +D +  +M      L  ++C +   +  LRR
Sbjct: 466 VALSWLSHLSSLKHLVMNHVNLTTAVDWVDEI--NMLPALKVLYLKQCGLRKTVPFLRR 522


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,540,518
Number of Sequences: 37544
Number of extensions: 339308
Number of successful extensions: 795
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)