Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_F21
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.02c |||2 OG-Fe|Schizosaccharomyces pombe|chr 1|||Manual        27   4.8  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    26   6.3  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    26   8.3  

>SPAP8A3.02c |||2 OG-Fe|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 407 EEKWLEENNQNEYTMKYIIQNNMGG 481
           EEKW+  + +   TM+ II+N++ G
Sbjct: 201 EEKWVSRSQRLSVTMRRIIENHVFG 225


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +2

Query: 311 YAEVHDMLRIISERLPFKAEPVSEEILEQKAAEEKWLEE 427
           Y  + +  R+++  L  K E + + ILE +A +E +LEE
Sbjct: 844 YTYLAESKRMLANELQMKQEDLEKVILELEAYKEIFLEE 882


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 17/57 (29%), Positives = 31/57 (54%)
 Frame = -1

Query: 444 YSFWLFSSNHFSSAAFCSKISSETGSALKGNLSDIILNMSCTSAYSHLPPTSRMILP 274
           Y  + FSS HF +    S+ISS  GS   G L ++  +   +S+++ + P   +++P
Sbjct: 700 YVVYYFSSLHFGA----SQISSAIGSFAVGCLGNMYSHFIKSSSFAVVLPAIFVLVP 752


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,721,716
Number of Sequences: 5004
Number of extensions: 49820
Number of successful extensions: 161
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)